Evidence map›Paper›PMID 28784613›Full record

ArticleMolecular cancer research : MCR2017

Comprehensive Genomic Profiling of Metastatic Squamous Cell Carcinoma of the Anal Canal.

Van Morris, Xiayu Rao, Curtis Pickering, Wai Chin Foo, Asif Rashid, Karina Eterovic, Taebeom Kim, Ken Chen, Jing Wang, Kenna Shaw and 1 more

Abstract read
In one paragraph

Article in Molecular cancer research : MCR, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 73 citations in OpenAlex.

  1. Trial
  2. Review
  3. Detection of PIK3CA Mutations in Anal Dysplasia.The Journal of surgical research · 2025
    Article
  4. Review
  5. Time Dependency for Human Papillomavirus Circulating Tumor DNA Detection after Chemoradiation as a Prognostic Biomarker for Localized Anal Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Recent Advances in the Management of Anal Cancer.Healthcare (Basel, Switzerland) · 2023
    Review
  14. Article
  15. Anal Cancer: The Past, Present and Future.Current oncology (Toronto, Ont.) · 2023
    Review
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Van MorrisGastrointestinal Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Xiayu RaoBioinformatics and Comp Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Curtis PickeringHead and Neck Surgery, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Wai Chin FooPathology Admin, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Asif RashidPathology Admin, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Karina EterovicSystems Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Taebeom KimBioinformatics and Comp Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Ken ChenBioinformatics and Comp Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Jing WangBioinformatics and Comp Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Kenna ShawInstitute for Personalized Cancer Therapy, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Cathy EngGastrointestinal Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas. Ceng@mdanderson.org.
The University of Texas MD Anderson Cancer Center · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Paul Calabresi Clinical Oncology AwardK12CA088084 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI David S. Hong, Scott Kopetz · 2000 to 2026
$14.0M
NCI NIH HHS K12 CA088084NCI NIH HHS P30 CA016672
6 · The paper itself

Abstract

Squamous cell carcinoma of the anal canal (SCCA) is a rare gastrointestinal malignancy with an increasing annual incidence globally. The majority of cases are linked to prior infection with the human papillomavirus (HPV). For patients with metastatic SCCA, no consensus standard treatment exists. Identification of relevant targeted agents as novel therapeutic approaches for metastatic SCCA has been limited by a lack of comprehensive molecular profiling. We performed whole-exome sequencing on tumor-normal pairs from 24 patients with metastatic SCCA. Tumor tissue from 17 additional patients was analyzed using a 263-gene panel as a validation cohort. Gene expression profiling was performed on available frozen tissue to assess for differential expression patterns. Based on these findings, patient-derived xenograft (PDX) models of SCCA were generated to test targeted therapies against PI3K and EGFR. Despite a low mutation burden, mutations in

Indexed as

AgedAged, 80 and overAnimalsAnus NeoplasmsCarcinoma, Squamous CellClass I Phosphatidylinositol 3-KinasesDNA-Binding ProteinsExome SequencingFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMiceMiddle AgedMutationNeoplasm MetastasisClass I Phosphatidylinositol 3-KinasesDNA-Binding ProteinsKMT2C protein, humanKMT2D protein, humanNeoplasm ProteinsPIK3CA protein, humanTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID28784613
PMCPMC5991496
OpenAlexW2743381441

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.