Evidence map›Paper›PMID 28784148›Full record

ArticleParasites & vectors2017

Detecting and characterizing mixed infections with genetic variants of Anaplasma phagocytophilum in roe deer (Capreolus capreolus) by developing an ankA cluster-specific nested PCR.

Maggy Jouglin, Sophie Chagneau, Frédéric Faille, Hélène Verheyden, Suzanne Bastian, Laurence Malandrin

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Diversity ofAnimals : an open access journal from MDPI · 2024
    Article
  2. Presence ofPathogens (Basel, Switzerland) · 2023
    Article
  3. Review
  4. Prevalence and Genotyping ofAnimals : an open access journal from MDPI · 2022
    Article
  5. Ecotyping ofAnimals : an open access journal from MDPI · 2021
    Article
  6. Article
  7. Review
  8. Presence of Roe Deer Affects the Occurrence ofInternational journal of environmental research and public health · 2019
    Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Maggy JouglinINRA, UMR1300 Biology, Epidemiology and Risk Analysis in Animal Health, CS 40706, F-44307, Nantes, France.
Sophie ChagneauINRA, UMR1300 Biology, Epidemiology and Risk Analysis in Animal Health, CS 40706, F-44307, Nantes, France.
Frédéric FailleINRA, UMR1300 Biology, Epidemiology and Risk Analysis in Animal Health, CS 40706, F-44307, Nantes, France.
Hélène VerheydenCEFS, Toulouse University, INRA, Castanet Tolosan, France.
Suzanne BastianINRA, UMR1300 Biology, Epidemiology and Risk Analysis in Animal Health, CS 40706, F-44307, Nantes, France.
Laurence MalandrinINRA, UMR1300 Biology, Epidemiology and Risk Analysis in Animal Health, CS 40706, F-44307, Nantes, France. laurence.malandrin@oniris-nantes.fr.
Oniris · FRUniversité Bretagne Loire · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAnaplasma phagocytophilum is a tick-transmitted Gram-negative obligate intracellular bacterium able to infect a wide variety of wild and domestic animals worldwide. Based on the genetic diversity observed with different molecular markers, several host-specific lineages have been identified. Roe deer is one of the most important reservoirs of this bacterium and hosts different genetic groups sometimes found on domestic animals. We therefore developed an ankA cluster-specific nested PCR (nPCR) to evaluate the prevalence of the three different ankA genetic groups described in roe deer (clusters II, III and IV) at three locations in France and the level of co-infections.

resultsThe specificity of the three nPCRs was assessed by partially sequencing 35 amplicons of ankA genes obtained from the different nested PCRs. All three genetic lineages were detected in roe deer from all three geographical locations. Of the infected deer population, 60.7% were co-infected by two or three different genetic variants. Co-infections varied from 42.9 to 70.6% of the infected population depending on the local infection prevalences (from 33.3 to 73.9%). All types of mixed infections occurred, suggesting the absence of a strict variant exclusion by another variant.

conclusionsMixed infections by two or three genetic variants of A. phagocytopilum are a common feature in roe deer. Genetic variants (cluster IV) also found in domestic ruminants (cattle and sheep) were present in all the roe deer populations analyzed, suggesting a shared epidemiological cycle.

Indexed as

Genetic VariationAnaplasma phagocytophilumAnimalsAnimals, DomesticArachnid VectorsCoinfectionDeerDisease ReservoirsDNA, BacterialEhrlichiosisFranceIxodesPhylogenyPolymerase Chain ReactionSensitivity and SpecificityDNA, BacterialAnaplasma phagocytophilumankA variantCapreolus capreolusCo-infectionFranceNested polymerase chain reactionReservoirTick-borne diseases

Identifiers

PMID28784148
PMCPMC5547487
OpenAlexW2744540228

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.