Evidence map›Paper›PMID 28784099›Full record

ArticleBMC infectious diseases2017

Plasmid-based high-resolution melting analysis for accurate detection of rpoB mutations in Mycobacterium tuberculosis isolates from Moroccan patients.

El Mehdi Bentaleb, My Driss El Messaoudi, Mohammed Abid, Malika Messaoudi, Ali K Yetisen, Hassan Sefrioui, Saaïd Amzazi, Hassan Ait Benhassou

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Prevalence and Molecular Typing of Colistin-ResistantInfection and drug resistance · 2020
    Article
  6. Mutations Associated with Rifampicin Resistance inInterdisciplinary perspectives on infectious diseases · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

El Mehdi BentalebMedical Biotechnology Center, Moroccan Foundation for Advanced Science, Innovation and Research (MAScIR), Rabat Design Center, Avenue Mohamed El Jazouli - Madinat Al Irfane, 10100, Rabat, Morocco.
My Driss El MessaoudiLaboratory of Tuberculosis, Pasteur Institute of Morocco, Casablanca, Morocco.
Mohammed AbidLaboratory of Mycobacteria Genetics, Pasteur Institute of Morocco, Tangier, Morocco.
Malika MessaoudiLaboratory of Tuberculosis, Pasteur Institute of Morocco, Casablanca, Morocco.
Ali K YetisenHarvard-MIT Division of Health Sciences and Technology, Harvard University and Massachusetts Institute of Technology, 65 Landsdowne Street, Cambridge, MA, 02139, USA.
Hassan SefriouiMedical Biotechnology Center, Moroccan Foundation for Advanced Science, Innovation and Research (MAScIR), Rabat Design Center, Avenue Mohamed El Jazouli - Madinat Al Irfane, 10100, Rabat, Morocco.
Saaïd AmzaziLaboratory of Biochemistry and Immunology, Faculty of Sciences, Mohammed V University, Rabat, Morocco.
Hassan Ait BenhassouMedical Biotechnology Center, Moroccan Foundation for Advanced Science, Innovation and Research (MAScIR), Rabat Design Center, Avenue Mohamed El Jazouli - Madinat Al Irfane, 10100, Rabat, Morocco. h.aitbenhassou@mascir.com.ORCID 0000-0002-5815-3531
Institut Pasteur du Maroc · MAMohammed V University · MAMoroccan Foundation for Advanced Science, Innovation and Research · MAHarvard University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRapid diagnosis of drug resistance in tuberculosis (TB) is pivotal for the timely initiation of effective antibiotic treatment to prevent the spread of drug-resistant strains. The development of low-cost, rapid and robust methods for drug-resistant TB detection is highly desirable for resource-limited settings.

methodsWe report the use of an in house plasmid-based quantitative polymerase chain reaction-high-resolution melting (qPCR-HRM) analysis for the detection of mutations related to rifampicin-resistant Mycobacterium tuberculosis (MTB) in clinical isolates from Moroccan patients. Five recombinant plasmids containing predominant mutations (S531L, S531W, H526Y and D516V) and the wild-type sequence of the Rifampicin Resistance-Determining Region (RRDR) have been used as controls to screen 45 rifampicin-resistant and 22 rifampicin-susceptible MTB isolates.

resultsThe sensitivity and the specificity of the qPCR-HRM analysis were 88.8% and 100% respectively as compared to rifampicin Drug Susceptibility Testing (DST). The results of qPCR-HRM and DNA sequencing had a concordance of 100%.

conclusionOur qPCR-HRM assay is a sensitive, accurate and cost-effective assay for the high-throughput screening of mutation-based drug resistance in TB reference laboratories.

Indexed as

Antitubercular AgentsBacterial ProteinsDNA-Directed RNA PolymerasesDNA Mutational AnalysisDrug Resistance, BacterialHumansMicrobial Sensitivity TestsMoroccoMutationMycobacterium tuberculosisPlasmidsPolymerase Chain ReactionRifampinSensitivity and SpecificityAntitubercular AgentsBacterial ProteinsDNA-Directed RNA PolymerasesRifampinrpoB protein, Mycobacterium tuberculosisDrug resistanceMycobacterium tuberculosisPlasmid-based controlsqPCR-HRMTuberculosis

Identifiers

PMID28784099
PMCPMC5547500
OpenAlexW2743623140

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.