Evidence map›Paper›PMID 28783165›Full record

ArticleNature genetics2017

TMPRSS2-ERG fusion co-opts master transcription factors and activates NOTCH signaling in primary prostate cancer.

Ken J Kron, Alexander Murison, Stanley Zhou, Vincent Huang, Takafumi N Yamaguchi, Yu-Jia Shiah, Michael Fraser, Theodorus van der Kwast, Paul C Boutros, Robert G Bristow and 1 more

Abstract read
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In one paragraph

Article in Nature genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 130 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
130citing papers in PubMed, 1 pooled it
17.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

130 citing papers in PubMed, 1 synthesis or guideline pooled it, 192 citations in OpenAlex.

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70 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Ken J KronPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.
Alexander MurisonPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.
Stanley ZhouPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0001-8187-0128
Vincent HuangOntario Institute for Cancer Research, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0002-6504-179X
Takafumi N YamaguchiOntario Institute for Cancer Research, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0003-1082-3871
Yu-Jia ShiahOntario Institute for Cancer Research, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0003-4989-2794
Michael FraserPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.
Theodorus van der KwastDepartment of Pathology and Laboratory Medicine, Toronto General Hospital, University Health Network, Toronto, Ontario, Canada.
Paul C BoutrosDepartment of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0003-0553-7520
Robert G BristowPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.
Mathieu LupienPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0003-0929-9478
University Health Network · CAOntario Institute for Cancer Research · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TMPRSS2-ERG (T2E) structural rearrangements typify ∼50% of prostate tumors and result in overexpression of the ERG transcription factor. Using chromatin, genomic and expression data, we show distinct cis-regulatory landscapes between T2E-positive and non-T2E primary prostate tumors, which include clusters of regulatory elements (COREs). This difference is mediated by ERG co-option of HOXB13 and FOXA1, implementing a T2E-specific transcriptional profile. We also report a T2E-specific CORE on the structurally rearranged ERG locus arising from spreading of the TMPRSS2 locus pre-existing CORE, assisting in its overexpression. Finally, we show that the T2E-specific cis-regulatory landscape underlies a vulnerability against the NOTCH pathway. Indeed, NOTCH pathway inhibition antagonizes the growth and invasion of T2E-positive prostate cancer cells. Taken together, our work shows that overexpressed ERG co-opts master transcription factors to deploy a unique cis-regulatory landscape, inducing a druggable dependency on NOTCH signaling in T2E-positive prostate tumors.

Indexed as

Gene Expression Regulation, NeoplasticCell Line, TumorCell MovementGene Expression ProfilingHepatocyte Nuclear Factor 3-alphaHomeodomain ProteinsHumansMaleOncogene Proteins, FusionProstatic NeoplasmsReceptors, NotchRegulatory Sequences, Nucleic AcidReverse Transcriptase Polymerase Chain ReactionRNA InterferenceSerine EndopeptidasesSignal TransductionERG protein, humanFOXA1 protein, humanHepatocyte Nuclear Factor 3-alphaHomeodomain ProteinsHOXB13 protein, humanOncogene Proteins, FusionReceptors, NotchSerine EndopeptidasesTMPRSS2-ERG fusion protein, humanTMPRSS2 protein, humanTranscriptional Regulator ERGTranscription Factors

Identifiers

PMID28783165
OpenAlexW2743661585

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.