Evidence map›Paper›PMID 28782633›Full record

ArticleThe Journal of allergy and clinical immunology2018

Plasma cell deficiency in human subjects with heterozygous mutations in Sec61 translocon alpha 1 subunit (SEC61A1).

Desirée Schubert, Marie-Christine Klein, Sarah Hassdenteufel, Andrés Caballero-Oteyza, Linlin Yang, Michele Proietti, Alla Bulashevska, Janine Kemming, Johannes Kühn, Sandra Winzer and 18 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 81 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 10 institutions in 5 countries.

Desirée SchubertCenter for Chronic Immunodeficiency, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany; Spemann Graduate School of Biology and Medicine (SGBM), Faculty of Medicine, University of Freiburg, Freiburg, Germany; Faculty of Biology, University of Freiburg, Freiburg, Germany.
Marie-Christine KleinMedical Biochemistry & Molecular Biology, Saarland University, Homburg, Germany.
Sarah HassdenteufelMedical Biochemistry & Molecular Biology, Saarland University, Homburg, Germany.
Andrés Caballero-OteyzaCenter for Chronic Immunodeficiency, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Linlin YangCenter for Chronic Immunodeficiency, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Michele ProiettiCenter for Chronic Immunodeficiency, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Alla BulashevskaCenter for Chronic Immunodeficiency, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Janine KemmingCenter for Chronic Immunodeficiency, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Johannes KühnCenter for Chronic Immunodeficiency, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Sandra WinzerCenter for Chronic Immunodeficiency, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Stephan RuschCenter for Chronic Immunodeficiency, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Manfred FliegaufCenter for Chronic Immunodeficiency, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Alejandro A SchäfferNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Md.
Stefan PfefferDepartment of Molecular Structural Biology, Max-Planck Institute of Biochemistry, Martinsried, Germany.
Roger GeigerInstitute for Research in Biomedicine, Università della Svizzera italiana, Bellinzona, Switzerland; Institute of Microbiology, ETH Zürich, Zürich, Switzerland.
Adolfo CavaliéExperimental and Clinical Pharmacology and Toxicology, Saarland University, Homburg, Germany.
Hongzhi CaoBGI-Shenzhen, Shenzhen, China.
Fang YangBGI-Shenzhen, Shenzhen, China.
Yong LiDepartment of Medicine, Division of Nephrology, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Marta RizziDepartment of Rheumatology and Clinical Immunology, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Hermann EibelCenter for Chronic Immunodeficiency, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Robin KobbeDepartment of Pediatrics, University Medical Centre Hamburg, Hamburg, Germany.
Amy L MarksBeaumont Children's Hospital Troy, Troy, Mich.
Brian P PeppersUniversity Hospitals Cleveland Medical Center, Allergy-Immunology Fellowship Program, Cleveland, Ohio.
Robert W HostofferUniversity Hospitals Cleveland Medical Center, Allergy-Immunology Fellowship Program, Cleveland, Ohio; Allergy and Immunology Associates, Mayfield Heights, Ohio.
Jennifer M PuckDepartment of Pediatrics, University of California San Francisco School of Medicine and UCSF Benioff Children's Hospital, San Francisco, Calif.
Richard ZimmermannFaculty of Biology, University of Freiburg, Freiburg, Germany.
Bodo GrimbacherCenter for Chronic Immunodeficiency, Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany; Institute of Immunity and Transplantation, UCL, London, United Kingdom. Electronic address: bodo.grimbacher@uniklinik-freiburg.de.
University of Freiburg · DESaarland University · DEBGI Group (China) · CNUniversity Hospitals of Cleveland · USCorewell Health Children's · USETH Zurich · CHMax Planck Institute of Biochemistry · DENational Institutes of Health · USUniversität Hamburg · DEUniversity of California, San Francisco · US

Funding

Case Studies In GeneticsZIALM000097 · NLM · NATIONAL LIBRARY OF MEDICINE · PI SCHAFFER, ALEJANDRO A · 2009 to 2019
$4.6M
Case Studies In GeneticsZ01LM000097 · NLM · NATIONAL LIBRARY OF MEDICINE · PI SCHAFFER, ALEJANDRO A · 2002 to 2008
$452k
Intramural NIH HHS Z01 LM000097
6 · The paper itself

Abstract

backgroundPrimary antibody deficiencies (PADs) are the most frequent primary immunodeficiencies in human subjects. The genetic causes of PADs are largely unknown. Sec61 translocon alpha 1 subunit (SEC61A1) is the major subunit of the Sec61 complex, which is the main polypeptide-conducting channel in the endoplasmic reticulum membrane. SEC61A1 is a target gene of spliced X-box binding protein 1 and strongly induced during plasma cell (PC) differentiation.

objectiveWe identified a novel genetic defect and studied its pathologic mechanism in 11 patients from 2 unrelated families with PADs.

methodsWhole-exome and targeted sequencing were conducted to identify novel genetic mutations. Functional studies were carried out ex vivo in primary cells of patients and in vitro in different cell lines to assess the effect of SEC61A1 mutations on B-cell differentiation and survival.

resultsWe investigated 2 families with patients with hypogammaglobulinemia, severe recurrent respiratory tract infections, and normal peripheral B- and T-cell subpopulations. On in vitro stimulation, B cells showed an intrinsic deficiency to develop into PCs. Genetic analysis and targeted sequencing identified novel heterozygous missense (c.254T>A, p.V85D) and nonsense (c.1325G>T, p.E381*) mutations in SEC61A1, segregating with the disease phenotype. SEC61A1-V85D was deficient in cotranslational protein translocation, and it disturbed the cellular calcium homeostasis in HeLa cells. Moreover, SEC61A1-V85D triggered the terminal unfolded protein response in multiple myeloma cell lines.

conclusionWe describe a monogenic defect leading to a specific PC deficiency in human subjects, expanding our knowledge about the pathogenesis of antibody deficiencies.

Indexed as

AgammaglobulinemiaB-LymphocytesCalciumCell DifferentiationCell LineCell Line, TumorExomeHEK293 CellsHeLa CellsHeterozygoteHumansImmunologic Deficiency SyndromesMutationPlasma CellsProtein TransportRespiratory Tract InfectionsCalciumSEC61A1 protein, humanSEC Translocation Channelsantibody deficiencycalcium homeostasisendoplasmic reticulum stressmultiple myelomaplasma cellprotein translocationSEC61A1translocon

Identifiers

PMID28782633
PMCPMC5797495
OpenAlexW2745013042

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.