Evidence map›Paper›PMID 28781753›Full record

ArticleF1000Research2017

A very simple, re-executable neuroimaging publication.

Satrajit S Ghosh, Jean-Baptiste Poline, David B Keator, Yaroslav O Halchenko, Adam G Thomas, Daniel A Kessler, David N Kennedy

Abstract read
In one paragraph

Article in F1000Research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Satrajit S GhoshMcGovern Institute for Brain Research, Massachusetts Institute of Technology: MIT, Cambridge, MA, USA.ORCID https://orcid.org/0000-0002-5312-6729
Jean-Baptiste PolineHenry Wheeler Jr. Brain Imaging Center, Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA.
David B KeatorDepartment of Psychiatry and Human Behavior, Department of Computer Science, Department of Neurology, University of California, Irvine, Irvine, CA, USA.
Yaroslav O HalchenkoDepartment of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, USA.
Adam G ThomasData Science and Sharing Team, National Institute of Mental Health, Intramural Research Programs, Bethesda, MD, USA.ORCID https://orcid.org/0000-0002-2850-1419
Daniel A KesslerDepartment of Psychiatry and Department of Radiology, University of Michigan, Ann Arbor, MI, USA.ORCID https://orcid.org/0000-0003-2052-025X
David N KennedyEunice K. Shriver Center and Department of Psychiatry, University of Massachusetts Medical School, Worcester, MA, USA.ORCID https://orcid.org/0000-0002-9377-0797

Funding

Resource DiscoveryP41EB019936 · NIBIB · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI David Nelson Kennedy · 2016 to 2026
$15.2M
Data Science and Sharing TeamZICMH002960 · NIMH · NATIONAL INSTITUTE OF MENTAL HEALTH · PI THOMAS, ADAM G · 2017 to 2025
$10.3M
Exposing the Deep Content of the Publication: Knowledge Extraction for Neuroimaging in Child PsychiatryR01MH083320 · NIMH · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI FRAZIER, JEAN A, KENNEDY, DAVID NELSON · 2009 to 2020
$6.3M
Nipype: Dataflows for Reproducible Biomedical ResearchR01EB020740 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GHOSH, SATRAJIT SUJIT · 2016 to 2019
$2.7M
OPERATION, SUPPORT AND STRATEGIC ENHANCEMENT OF THE NEUROSCIENCE INFORMATION FRAMEWORKU24DA039832 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GRETHE, JEFFREY S., MARTONE, MARYANN E · 2015 to 2016
$2.0M
Neuroimaging Informatics Tools and Resources Clearinghouse Outreach, Infrastructure, and Content MaintenanceU24EB023398 · NIBIB · TCG, INC. · PI KENNEDY, DAVID NELSON, PREUSS, NINA · 2016 to 2018
$1.7M
NIBIB NIH HHS P41 EB019936NIBIB NIH HHS R01 EB020740NIBIB NIH HHS U24 EB023398NIDA NIH HHS U24 DA039832NIMH NIH HHS R01 MH083320
6 · The paper itself

Abstract

Reproducible research is a key element of the scientific process. Re-executability of neuroimaging workflows that lead to the conclusions arrived at in the literature has not yet been sufficiently addressed and adopted by the neuroimaging community. In this paper, we document a set of procedures, which include supplemental additions to a manuscript, that unambiguously define the data, workflow, execution environment and results of a neuroimaging analysis, in order to generate a verifiable re-executable publication. Re-executability provides a starting point for examination of the generalizability and reproducibility of a given finding.

Indexed as

Neuroimaging analysisre-executable publicationreproducibility

Identifiers

PMID28781753
PMCPMC5516225

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.