Evidence map›Paper›PMID 28781748›Full record

ArticleF1000Research2017

ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR.

L Larcombe, R Hendricusdottir, T K Attwood, F Bacall, N Beard, L J Bellis, W B Dunn, J M Hancock, A Nenadic, C Orengo and 8 more

Abstract read
In one paragraph

Article in F1000Research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Community needs for FAIR pathogen data.bioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

L LarcombeMRC Human Genetics Unit, The Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, EH4 2XU, UK.
R HendricusdottirMRC Human Genetics Unit, The Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, EH4 2XU, UK.
T K AttwoodSchool of Computer Science, University of Manchester, Manchester, M13 9PL, UK.
F BacallSchool of Computer Science, University of Manchester, Manchester, M13 9PL, UK.
N BeardSchool of Computer Science, University of Manchester, Manchester, M13 9PL, UK.
L J BellisDepartment of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK.
W B DunnBirmingham Metabolomics Training Centre, School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.
J M HancockEarlham Institute, Norwich, NR4 7UZ, UK.ORCID https://orcid.org/0000-0003-2991-2217
A NenadicThe Software Sustainability Institute, University of Manchester, Manchester, M13 9PL, UK.
C OrengoUniversity College London, London, WC1E 6BT, UK.
B OverduinEdinburgh Genomics, University of Edinburgh, Edinburgh, EH9 3FL, UK.
S-A SansoneOxford e-Research Centre, University of Oxford, Oxford, OX1 3QG, UK.
M ThurstonOxford e-Research Centre, University of Oxford, Oxford, OX1 3QG, UK.
M R ViantBirmingham Metabolomics Training Centre, School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.
C L WinderBirmingham Metabolomics Training Centre, School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.
C A GobleSchool of Computer Science, University of Manchester, Manchester, M13 9PL, UK.
C P PontingMRC Human Genetics Unit, The Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, EH4 2XU, UK.
G RusticiDepartment of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ELIXIR-UK is the UK node of ELIXIR, the European infrastructure for life science data. Since its foundation in 2014, ELIXIR-UK has played a leading role in training both within the UK and in the ELIXIR Training Platform, which coordinates and delivers training across all ELIXIR members. ELIXIR-UK contributes to the Training Platform's coordination and supports the development of training to address key skill gaps amongst UK scientists. As part of this work it acts as a conduit for nationally-important bioinformatics training resources to promote their activities to the ELIXIR community. ELIXIR-UK also leads ELIXIR's flagship Training Portal, TeSS, which collects information about a diverse range of training and makes it easily accessible to the community. ELIXIR-UK also works with others to provide key digital skills training, partnering with the Software Sustainability Institute to provide Software Carpentry training to the ELIXIR community and to establish the Data Carpentry initiative, and taking a lead role amongst national stakeholders to deliver the StaTS project - a coordinated effort to drive engagement with training in statistics.

Indexed as

BioinformaticsELIXIR-UKGenomicsImpactMetabolomicsStructural BioinformaticsTeSSTraining

Identifiers

PMID28781748
PMCPMC5521157

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.