Evidence map›Paper›PMID 28779340›Full record

ArticleRice (New York, N.Y.)2017

Identification of resistant germplasm containing novel resistance genes at or tightly linked to the Pi2/9 locus conferring broad-spectrum resistance against rice blast.

Gui Xiao, Frances Nikki Borja, Ramil Mauleon, Jonas Padilla, Mary Jeanie Telebanco-Yanoria, Jianxia Yang, Guodong Lu, Maribel Dionisio-Sese, Bo Zhou

Open access · goldAbstract read
In one paragraph

Article in Rice (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
10.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Recent Progress in Rice Broad-Spectrum Disease Resistance.International journal of molecular sciences · 2021
    Review
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Gui XiaoGenetics and Biotechnology Division, International Rice Research Institute, DAPO Box 7777, Metro Manila, Philippines.
Frances Nikki BorjaGenetics and Biotechnology Division, International Rice Research Institute, DAPO Box 7777, Metro Manila, Philippines.
Ramil MauleonGenetics and Biotechnology Division, International Rice Research Institute, DAPO Box 7777, Metro Manila, Philippines.
Jonas PadillaGenetics and Biotechnology Division, International Rice Research Institute, DAPO Box 7777, Metro Manila, Philippines.
Mary Jeanie Telebanco-YanoriaGenetics and Biotechnology Division, International Rice Research Institute, DAPO Box 7777, Metro Manila, Philippines.
Jianxia YangFujian Agriculture and Forest University, Fuzhou, 350002, China.
Guodong LuFujian Agriculture and Forest University, Fuzhou, 350002, China.
Maribel Dionisio-SeseInstitute of Biological Sciences, University of the Philippines Los Baños, 4031, Laguna, Philippines.
Bo ZhouGenetics and Biotechnology Division, International Rice Research Institute, DAPO Box 7777, Metro Manila, Philippines. b.zhou@irri.org.ORCID http://orcid.org/0000-0002-2360-5016
International Rice Research Institute · PHFujian Agriculture and Forestry University · CNUniversity of the Philippines Los Baños · PH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe rice Pi2/9 locus harbors multiple resistance (R) genes each controlling broad-spectrum resistance against diverse isolates of Magnaporthe oryzae, a fungal pathogen causing devastating blast disease to rice. Identification of more resistance germplasm containing novel R genes at or tightly linked to the Pi2/9 locus would promote breeding of resistance rice cultivars.

resultsIn this study, we aim to identify resistant germplasm containing novel R genes at or tightly linked to the Pi2/9 locus using a molecular marker, designated as Pi2/9-RH (Pi2/9 resistant haplotype), developed from the 5' portion of the Pi2 sequence which was conserved only in the rice lines containing functional Pi2/9 alleles. DNA analysis using Pi2/9-RH identified 24 positive lines in 55 shortlisted landraces which showed resistance to 4 rice blast isolates. Analysis of partial sequences of the full-length cDNAs of Pi2/9 homologues resulted in the clustering of these 24 lines into 5 haplotypes each containing different Pi2/9 homologues which were designated as Pi2/9-A5, -A15, -A42, -A53, and -A54. Interestingly, Pi2/9-A5 and Pi2/9-A54 are identical to Piz-t and Pi2, respectively. To validate the association of other three novel Pi2/9 homologues with the blast resistance, monogenic lines at BC

conclusionThe newly developed marker Pi2/9-RH could be used as a potentially diagnostic marker for the quick identification of resistant donors containing functional Pi2/9 alleles or unknown linked R genes. The three new monogenic lines containing the Pi2/9 introgression segment could be used as valuable materials for disease assessment and resistance donors in breeding program.

Indexed as

Magnaporthe oryzaePi2/9 homologuesResistant haplotype specific marker

Identifiers

PMID28779340
PMCPMC5544663
OpenAlexW2742461033

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.