Evidence map›Paper›PMID 28779093›Full record

ArticleScientific reports2017

Reactivity of human AGO2 monoclonal antibody 11A9 with the SWI/SNF complex: A case study for rigorously defining antibody selectivity.

Roderick A P M van Eijl, Teun van den Brand, Luan N Nguyen, Klaas W Mulder

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Roderick A P M van EijlDepartment of Molecular Developmental Biology, Radboud University Nijmegen, Nijmegen, The Netherlands.
Teun van den BrandDepartment of Molecular Developmental Biology, Radboud University Nijmegen, Nijmegen, The Netherlands.ORCID 0000-0002-9335-7468
Luan N NguyenMolecular Biology, Radboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands.
Klaas W MulderDepartment of Molecular Developmental Biology, Radboud University Nijmegen, Nijmegen, The Netherlands. k.mulder@science.ru.nl.
Radboud University Nijmegen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we originally aimed to characterize the potential role of Argonaute 2 (AGO2) in the nucleus, a key protein of the miRNA machinery. We combined Chromatin Immunoprecipitation (ChIP) with high throughput sequencing (ChIP-seq) and quantitative mass spectrometry (ChIP-MS) using the broadly used AGO2 11A9 antibody to determine interactions with chromatin and nuclear proteins. We found a previously described interaction between AGO2 and SWI/SNF on chromatin with ChIP-MS and observed enrichment at enhancers and transcription start sites using ChIP-seq. However, antibody specificity issues can produce misleading results for ChIP, RNA-seq and Mass spectrometry. Therefore, we developed a CRISPR/Cas9 engineered AGO2

Indexed as

Antibodies, MonoclonalArgonaute ProteinsChromatin Assembly and DisassemblyChromatin ImmunoprecipitationChromosomal Proteins, Non-HistoneCRISPR-Cas SystemsGene Knockdown TechniquesGenetic EngineeringHEK293 CellsHigh-Throughput Nucleotide SequencingHumansMass SpectrometryProtein BindingTranscription FactorsAGO2 protein, humanAntibodies, MonoclonalArgonaute ProteinsChromosomal Proteins, Non-HistoneSMARCC1 protein, humanSWI-SNF-B chromatin-remodeling complexTranscription Factors

Identifiers

PMID28779093
PMCPMC5544689
OpenAlexW2740597255

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.