Evidence map›Paper›PMID 28777335›Full record

ArticleInternational journal of molecular sciences2017

Systematic Selection of Reference Genes for the Normalization of Circulating RNA Transcripts in Pregnant Women Based on RNA-Seq Data.

Stephen S C Chim, Karen K W Wong, Claire Y L Chung, Stephanie K W Lam, Jamie S L Kwok, Chit-Ying Lai, Yvonne K Y Cheng, Annie S Y Hui, Meng Meng, Oi-Ka Chan and 4 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

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  6. Blood gene transcript signature profiling in pregnancies resulting in preterm birth: A systematic review.European journal of obstetrics & gynecology and reproductive biology: X · 2020
    Review
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  9. S100A4 mRNA-protein relationship uncovered by measurement noise reduction.Journal of molecular medicine (Berlin, Germany) · 2020
    Article
  10. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 2 countries.

Stephen S C ChimDepartment of Obstetrics & Gynaecology, Faculty of Medicine, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China. sschim@cuhk.edu.hk.
Karen K W WongDepartment of Obstetrics & Gynaecology, Faculty of Medicine, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China. wkwkaren@cuhk.edu.hk.
Claire Y L ChungSchool of Life Sciences, Faculty of Science, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China. clairechung@link.cuhk.edu.hk.
Stephanie K W LamDepartment of Obstetrics & Gynaecology, Faculty of Medicine, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China. steplamkw@gmail.com.
Jamie S L KwokHong Kong Bioinformatics Center, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China. jamie_slk@link.cuhk.edu.hk.
Chit-Ying LaiDepartment of Obstetrics & Gynaecology, Faculty of Medicine, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China. cylai@cuhk.edu.hk.
Yvonne K Y ChengDepartment of Obstetrics & Gynaecology, Faculty of Medicine, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China. yvonnecheng@cuhk.edu.hk.
Annie S Y HuiDepartment of Obstetrics & Gynaecology, Faculty of Medicine, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China. anniehui@cuhk.edu.hk.
Meng MengDepartment of Obstetrics & Gynaecology, Faculty of Medicine, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China. mengmengmumu@gmail.com.
Oi-Ka ChanDepartment of Obstetrics & Gynaecology, Faculty of Medicine, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China. cokchan@cuhk.edu.hk.
Stephen K W TsuiHong Kong Bioinformatics Center, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China. kwtsui@cuhk.edu.hk.
Keun-Young LeeDepartment of Obstetrics & Gynaecology, Division of Maternal and Fetal Medicine, Kangnam Sacred Heart Hospital, College of Medicine, Hallym University, Seoul 07441, Korea. mfmlee@hallym.ac.kr.
Ting-Fung ChanSchool of Life Sciences, Faculty of Science, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China. tf.chan@cuhk.edu.hk.
Tak-Yeung LeungDepartment of Obstetrics & Gynaecology, Faculty of Medicine, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China. tyleung@cuhk.edu.hk.
Chinese University of Hong Kong · HKHallym University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNA transcripts circulating in peripheral blood represent an important source of non-invasive biomarkers. To accurately quantify the levels of circulating transcripts, one needs to normalize the data with internal control reference genes, which are detected at relatively constant levels across blood samples. A few reference gene candidates have to be selected from transcriptome data before the validation of their stable expression by reverse-transcription quantitative polymerase chain reaction. However, there is a lack of transcriptome, let alone whole-transcriptome, data from maternal blood. To overcome this shortfall, we performed RNA-sequencing on blood samples from women presenting with preterm labor. The

Indexed as

AlgorithmsExonsFemaleGene Expression RegulationHumansMolecular Sequence AnnotationPregnancyReference StandardsRNASequence Analysis, RNASoftwareTranscriptomeTumor Protein, Translationally-Controlled 1RNATPT1 protein, humanTumor Protein, Translationally-Controlled 1blood biomarkersdenoisegeNormnormalizationNormFinderreference targetRemoval of Unwanted Variation from RNA-seq data (RUVSeq)reverse-transcriptase polymerase chain reaction (RT-PCR)technical variationtranscriptomics

Identifiers

PMID28777335
PMCPMC5578099
OpenAlexW2949870349

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.