Evidence map›Paper›PMID 28777089›Full record

ArticleActa crystallographica. Section F, Structural biology communications2017

Crystal structure of the putative cytoplasmic protein STM0279 (Hcp2) from Salmonella typhimurium.

Qing Peng Lin, Zeng Qiang Gao, Zhi Geng, Heng Zhang, Yu Hui Dong

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Qing Peng LinSchool of Life Sciences, University of Science and Technology of China, Hefei 230027, People's Republic of China.
Zeng Qiang GaoBeijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, People's Republic of China.
Zhi GengBeijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, People's Republic of China.
Heng ZhangBeijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, People's Republic of China.
Yu Hui DongBeijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, People's Republic of China.
Chinese Academy of Sciences · CNUniversity of Science and Technology of China · CN

Funding

National Natural Science Foundation of China 31570744National Natural Science Foundation of China 31670059Strategic Priority Research Program of CAS XDB08030103
6 · The paper itself

Abstract

STM0279 is a putative cytoplasmic protein from Salmonella typhimurium and was recently renamed haemolysin co-regulated protein 2 (Hcp2), with the neighbouring STM0276 being Hcp1. Both of them are encoded by the type VI secretion system (T6SS) of the Salmonella pathogenicity island 6 (SPI-6) locus and have high sequence identity. The Hcp proteins may function as a vital component of the T6SS nanotube and as a transporter and chaperone of diverse effectors from the bacterial T6SS. In this study, the crystal structure and the oligomeric state in solution of Hcp2 from S. typhimurium (StHcp2) were investigated. The crystal structure refined to 3.0 Å resolution showed that the protein is composed of a β-barrel domain with extended loops and can form hexameric rings as observed in known Hcp homologues. Mutation of the extended loop was found to partly destabilize the hexameric conformation into monomers or cause the production of inclusion bodies, suggesting it has an important role in hexameric ring formation.

Indexed as

Amino Acid SequenceBacterial ProteinsBinding SitesCloning, MolecularCrystallography, X-RayCytoplasmEscherichia coliGene ExpressionGenetic VectorsGenomic IslandsInclusion BodiesModels, MolecularMutationProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandBacterial ProteinsRecombinant Fusion ProteinsType VI Secretion Systemscrystal structurehaemolysin co-regulated proteinhexameric ringsT6SS assemblytype VI secretion system

Identifiers

PMID28777089
PMCPMC5544003
OpenAlexW2740751753

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.