ArticlemSphere
Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information.
Article in mSphere. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
49 citing papers in PubMed.
- Genome-based predictions of metabolic preferences and substrate phenotypes in psychrotrophic bacteria from permafrost environments.Microbiology spectrum · 2026Article
- Sources and traits of bacteria and fungi found in the near-surface atmosphere.Applied and environmental microbiology · 2026Article
- Machine learning-based linking of bacterial genomes to optimal growth pH: a foundation for rational microbial engineering.Journal of animal science and biotechnology · 2026Article
- BactoTraits: a trait database for exploring functional diversity of bacterial communities.Scientific data · 2026Article
- Constructing a "periodic table" of bacteria to map diversity in trait space.The ISME journal · 2026Article
- Functional gut microbiota dynamics of generalist and specialist bacteria in association with chicken growth.ISME communications · 2026Article
- The Importance of Humic Acids in Shaping the Resistance of Soil Microorganisms and the Tolerance ofInternational journal of molecular sciences · 2025Article
- Microllm: a structured information extraction tool using large language models and named entity recognition in microbiology.Briefings in bioinformatics · 2025Article
- Gelling and reducing agents are potential carbon and energy sources in culturing of anaerobic microorganisms.Applied and environmental microbiology · 2025Article
- Article
- Leveraging genomic information to predict environmental preferences of bacteria.The ISME journal · 2024Review
- Searching for Principles of Microbial Ecology Across Levels of Biological Organization.Integrative and comparative biology · 2023Article
- Genome content predicts the carbon catabolic preferences of heterotrophic bacteria.Nature microbiology · 2023Article
- The phenotype and genotype of fermentative prokaryotes.Science advances · 2023Article
- From genotype to phenotype: computational approaches for inferring microbial traits relevant to the food industry.FEMS microbiology reviews · 2023Review
- The core mangrove microbiome reveals shared taxa potentially involved in nutrient cycling and promoting host survival.Environmental microbiome · 2023Article
- Building a genome-based understanding of bacterial pH preferences.Science advances · 2023Article
- Linking niche size and phylogenetic signals to predict future soil microbial relative abundances.Frontiers in microbiology · 2023Article
- Function-Based Rhizosphere Assembly along a Gradient of Desiccation in the Former Aral Sea.mSystems · 2022Article
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Cultivation in the laboratory is essential for understanding the phenotypic characteristics and environmental preferences of bacteria. However, basic phenotypic information is not readily accessible. Here, we compiled phenotypic and environmental tolerance information for >5,000 bacterial strains described in the
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.