ArticleScientific reports2017
Rapid de novo assembly of the European eel genome from nanopore sequencing reads.
Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 63 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
63 citing papers in PubMed, 123 citations in OpenAlex.
- High-quality chromosome-level genome assembly of the whitespotted conger (Conger myriaster).Scientific data · 2025Article
- A chromosome-anchored reference assembly for the gray snapper, Lutjanus griseus.Molecular biology reports · 2025Article
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- Genomic resources for the Yellowfin tuna Thunnus albacares.Molecular biology reports · 2024Article
- Panmixia in the American eel extends to its tropical range of distribution: Biological implications and policymaking challenges.Evolutionary applications · 2023Article
- NanoDeep: a deep learning framework for nanopore adaptive sampling on microbial sequencing.Briefings in bioinformatics · 2023Article
- Genome assembly and isoform analysis of a highly heterozygous New Zealand fisheries species, the tarakihi (Nemadactylus macropterus).G3 (Bethesda, Md.) · 2023Article
- Genomic microsatellite characteristics analysis ofBiodiversity data journal · 2023Article
- A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization.GigaScience · 2022Article
- Sequencing Bait: Nuclear and Mitogenome Assembly of an Abundant Coastal Tropical and Subtropical Fish, Atherinomorus stipes.Genome biology and evolution · 2022Article
- Dynamic evolution of transient receptor potential vanilloid (TRPV) ion channel family with numerous gene duplications and losses.Frontiers in endocrinology · 2022Article
- Whole genome sequencing of marine organisms by Oxford Nanopore Technologies: Assessment and optimization of HMW-DNA extraction protocols.Ecology and evolution · 2021Article
- Applications and potentials of nanopore sequencing in the (epi)genome and (epi)transcriptome era.Innovation (Cambridge (Mass.)) · 2021Review
- Nanopore sequencing technology, bioinformatics and applications.Nature biotechnology · 2021Review
- Genome and transcriptome analysis of the beet armyworm Spodoptera exigua reveals targets for pest control.G3 (Bethesda, Md.) · 2021Article
- MinION nanopore sequencing and assembly of a complete human papillomavirus genome.Journal of virological methods · 2021Article
- Estimation of Genome Size in the Endemic SpeciesPlants (Basel, Switzerland) · 2021Article
- The digestive tract as an essential organ for water acquisition in marine teleosts: lessons from euryhaline eels.Zoological letters · 2021Review
- What Goes Wrong during Early Development of Artificially Reproduced European EelAnimals : an open access journal from MDPI · 2021Article
- Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation.Genome biology and evolution · 2021Article
3 more citing papers are in PubMed but not listed here.
Corrections and comments
- Erratum issued
Authors and funding
13 authors at 6 institutions in 4 countries.
Funding
Abstract
We have sequenced the genome of the endangered European eel using the MinION by Oxford Nanopore, and assembled these data using a novel algorithm specifically designed for large eukaryotic genomes. For this 860 Mbp genome, the entire computational process takes two days on a single CPU. The resulting genome assembly significantly improves on a previous draft based on short reads only, both in terms of contiguity (N50 1.2 Mbp) and structural quality. This combination of affordable nanopore sequencing and light weight assembly promises to make high-quality genomic resources accessible for many non-model plants and animals.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.