Evidence map›Paper›PMID 28775267›Full record

ArticleScientific reports2017

Ectoine can enhance structural changes in DNA in vitro.

S Meyer, M-A Schröter, M B Hahn, T Solomun, H Sturm, H J Kunte

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Fullerenol CInternational journal of nanomedicine · 2024
    Article
  3. Article
  4. Article
  5. Genomic Investigation of DesertMicroorganisms · 2022
    Article
  6. Review
  7. Article
  8. Article
  9. Raman Spectroscopic Signature of Ectoine Conformations in Bulk Solution and Crystalline State.Chemphyschem : a European journal of chemical physics and physical chemistry · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

S MeyerFederal Institute for Materials Research and Testing, D-12205, Berlin, Germany. Susann.Meyer@bam.de.
M-A SchröterFederal Institute for Materials Research and Testing, D-12205, Berlin, Germany.
M B HahnFederal Institute for Materials Research and Testing, D-12205, Berlin, Germany.ORCID 0000-0002-5050-7083
T SolomunFederal Institute for Materials Research and Testing, D-12205, Berlin, Germany.
H SturmFederal Institute for Materials Research and Testing, D-12205, Berlin, Germany.ORCID 0000-0002-8091-4077
H J KunteFederal Institute for Materials Research and Testing, D-12205, Berlin, Germany.
Federal Institute For Materials Research and Testing · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Strand breaks and conformational changes of DNA have consequences for the physiological role of DNA. The natural protecting molecule ectoine is beneficial to entire bacterial cells and biomolecules such as proteins by mitigating detrimental effects of environmental stresses. It was postulated that ectoine-like molecules bind to negatively charged spheres that mimic DNA surfaces. We investigated the effect of ectoine on DNA and whether ectoine is able to protect DNA from damages caused by ultraviolet radiation (UV-A). In order to determine different isoforms of DNA, agarose gel electrophoresis and atomic force microscopy experiments were carried out with plasmid pUC19 DNA. Our quantitative results revealed that a prolonged incubation of DNA with ectoine leads to an increase in transitions from supercoiled (undamaged) to open circular (single-strand break) conformation at pH 6.6. The effect is pH dependent and no significant changes were observed at physiological pH of 7.5. After UV-A irradiation in ectoine solution, changes in DNA conformation were even more pronounced and this effect was pH dependent. We hypothesize that ectoine is attracted to the negatively charge surface of DNA at lower pH and therefore fails to act as a stabilizing agent for DNA in our in vitro experiments.

Indexed as

Amino Acids, DiaminoDNADNA DamageElectrophoresis, Agar GelHydrogen-Ion ConcentrationMicroscopy, Atomic ForceNucleic Acid ConformationPlasmidsUltraviolet RaysAmino Acids, DiaminoDNAectoine

Identifiers

PMID28775267
PMCPMC5543045
OpenAlexW2740237869

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.