Evidence map›Paper›PMID 28774780›Full record

ArticleMolecular and cellular endocrinology2018

Differentially expressed genes in PPARγ-deficient MSCs.

Yun Su, Xiaona Shen, Jie Chen, Carlos M Isales, Jing Zhao, Xing-Ming Shi

Abstract read
In one paragraph

Article in Molecular and cellular endocrinology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Deletion of PPARγ in Mesenchymal Lineage Cells Protects Against Aging-Induced Cortical Bone Loss in Mice.The journals of gerontology. Series A, Biological sciences and medical sciences · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Yun SuDepartment of Neuroscience & Regenerative Medicine, USA.
Xiaona ShenDepartment of Mathematics, Logistical Engineering University, Chongqing, China.
Jie ChenDepartment of Biostatistics and Epidemiology, Augusta University, Augusta, GA, USA.
Carlos M IsalesDepartment of Neuroscience & Regenerative Medicine, USA; Orthopaedic Surgery, Augusta University, Augusta, GA, USA.
Jing ZhaoDepartment of Mathematics, Logistical Engineering University, Chongqing, China. Electronic address: zhaojanne@gmail.com.
Xing-Ming ShiDepartment of Neuroscience & Regenerative Medicine, USA; Orthopaedic Surgery, Augusta University, Augusta, GA, USA. Electronic address: xshi@augusta.edu.
Augusta University · USPLA Army Service Academy · CNCenter for Neuroscience and Regenerative Medicine · US

Funding

Inflammation and bone loss with agingR01AG046248 · NIA · AUGUSTA UNIVERSITY · PI SHI, XINGMING · 2013 to 2017
$1.1M
NIA NIH HHS R01 AG046248
6 · The paper itself

Abstract

Peroxisome proliferator-activated receptor gamma (PPARγ) is a key regulator of adipogenesis. It is also a central player in energy metabolism, inflammation and immunity. As an important nuclear transcription factor, PPARγ can regulate the expression and function of genes or biological processes directly or indirectly via association with other factors and thus modulate their activities. To better understand the impact of PPARγ on the global gene expression profile, we evaluated the bioinformatic data, which revealed the changes that occurred in genes and their pathways in the absence of PPARγ. In brief, we performed RNA deep sequencing (RNA-Seq) analysis using RNA samples isolated from multipotent mesenchymal stromal cells (MSCs) of PPARγ knockout and wild type control mice. The RNA-Seq data sets were then subjected to bioinformatic analyses from various angles to better reveal the breadth of PPARγ function in different biological processes. Our results reveal novel genes and networks modulated by PPARγ and provides new insights into our understanding of the physiologic and pathophysiologic role this nuclear receptor plays in health and disease.

Indexed as

Gene Expression ProfilingAnimalsGene Expression RegulationGene OntologyGene Regulatory NetworksMesenchymal Stem CellsMice, KnockoutPPAR gammaReproducibility of ResultsPPAR gammaAdipocyteBone marrowDifferential expressionInflammationMSCPPARγRNA-Seq

Identifiers

PMID28774780
PMCPMC5792374
OpenAlexW2740556916

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.