Evidence map›Paper›PMID 28771537›Full record

ArticlePloS one2017

A Spirochaete is suggested as the causative agent of Akoya oyster disease by metagenomic analysis.

Tomomasa Matsuyama, Motoshige Yasuike, Atushi Fujiwara, Yoji Nakamura, Tomokazu Takano, Takeshi Takeuchi, Noriyuki Satoh, Yoshikazu Adachi, Yasushi Tsuchihashi, Hideo Aoki and 5 more

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. A high-quality, haplotype-phased genome reconstruction reveals unexpected haplotype diversity in a pearl oyster.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. The comparison of the intensity of human intestinal spirochetes betweenJournal of clinical biochemistry and nutrition · 2019
    Article
  10. Microbiome of the Black-Lipped Pearl OysterFrontiers in microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Tomomasa MatsuyamaResearch Center of Fish Diseases, National Research Institute of Aquaculture, Japan Fisheries Research and Education Agency, Minami-Ise, Mie, Japan.ORCID http://orcid.org/0000-0002-9520-8263
Motoshige YasuikeResearch Center for Bioinformatics and Biosciences, National Research Institute of Fisheries Science, Japan Fisheries Research and Education Agency, Yokohama, Kanagawa, Japan.
Atushi FujiwaraResearch Center for Bioinformatics and Biosciences, National Research Institute of Fisheries Science, Japan Fisheries Research and Education Agency, Yokohama, Kanagawa, Japan.
Yoji NakamuraResearch Center for Bioinformatics and Biosciences, National Research Institute of Fisheries Science, Japan Fisheries Research and Education Agency, Yokohama, Kanagawa, Japan.
Tomokazu TakanoResearch Center of Fish Diseases, National Research Institute of Aquaculture, Japan Fisheries Research and Education Agency, Minami-Ise, Mie, Japan.
Takeshi TakeuchiMarine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.
Noriyuki SatohMarine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.
Yoshikazu AdachiDepartment of Biological production science, College of Agriculture, Ibaraki University, Ami, Ibaraki, Japan.
Yasushi TsuchihashiMie Prefecture Fisheries Research Institute, Shima, Mie, Japan.
Hideo AokiMie Prefecture Fisheries Research Institute, Shima, Mie, Japan.
Kazushi OdawaraEhime Prefecture Fisheries Research Center, Uwajima, Ehime, Japan.
Shunsuke IwanagaNagasaki Prefectural Institute of Fisheries, Nagasaki, Nagasaki, Japan.
Jun KuritaResearch Center of Fish Diseases, National Research Institute of Aquaculture, Japan Fisheries Research and Education Agency, Minami-Ise, Mie, Japan.
Takashi KamaishiResearch Center of Fish Diseases, National Research Institute of Aquaculture, Japan Fisheries Research and Education Agency, Minami-Ise, Mie, Japan.
Chihaya NakayasuResearch Center of Fish Diseases, National Research Institute of Aquaculture, Japan Fisheries Research and Education Agency, Minami-Ise, Mie, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mass mortality that is acompanied by reddish browning of the soft tissues has been occurring in cultured pearl oyster, Pinctada fucata martensii. The disease is called Akoya oyster disease (AOD). Although spreading pattern of the disease and transmission experiments suggest that the disease is infectious, the causative agent has not yet been identified. We used shotgun and 16S rRNA-based metagenomic analysis to identify genes that are present specifically in affected oysters. The genes found only in diseased oysters were mostly bacterial origin, suggesting that the causative agent was a bacterial pathogen. This hypothesis was supported by the inhibition of AOD development in naïve oysters injected with the hemolymph of diseased animals followed immediately with penicillin bath-administration. Further analyses of the hemolymph and mantle specifically and universally detected genes of bacteria that belong to phylum Spirochaetes in diseased pearl oysters but not in healthy oysters. By in situ hybridization or immunostaining, a Brachyspira-like bacterium was observed in the smears of hemolymph from affected oysters, but not from healthy oysters. Phylogenetic analysis using 16S rRNA sequences showed that the presumptive causative bacterium was outside of but most closely related to family Brachyspiraceae. We propose 'Candidatus Maribrachyspira akoyae' gen. nov, sp nov., for this bacterium.

Indexed as

MetagenomicsAnimalsAnimal ShellsDNAHemolymphIn Situ Hybridization, FluorescencePenicillinsPhylogenyPinctadaRNA, Ribosomal, 16SSequence Analysis, DNASpirochaetaSpirochaetales InfectionsDNAPenicillinsRNA, Ribosomal, 16S

Identifiers

PMID28771537
PMCPMC5542438

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.