Evidence map›Paper›PMID 28771529›Full record

ArticlePloS one2017

An evolutionarily conserved glycine-tyrosine motif forms a folding core in outer membrane proteins.

Marcin Michalik, Marcella Orwick-Rydmark, Michael Habeck, Vikram Alva, Thomas Arnold, Dirk Linke

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Rationale in Custom Design of Transmembrane β-Barrel Pores.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  6. Sculpting conducting nanopore size and shape throughbioRxiv : the preprint server for biology · 2023
    Article
  7. Identification of the Keratin-Associated Protein 22-2 Gene in theAnimals : an open access journal from MDPI · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Outer membrane protein evolution.Current opinion in structural biology · 2021
    Review
  12. De novo design of transmembrane β barrels.Science (New York, N.Y.) · 2021
    Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Marcin MichalikDepartment of Biosciences, University of Oslo, Oslo, Norway.
Marcella Orwick-RydmarkDepartment of Biosciences, University of Oslo, Oslo, Norway.
Michael HabeckStatistical inverse problems in Biophysics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.
Vikram AlvaDepartment of Protein Evolution, Max Planck Institute for Developmental Biology, Tübingen, Germany.
Thomas ArnoldPrevious affiliation: Department of Protein Evolution, Max Planck Institute for Developmental Biology, Tübingen, Germany.
Dirk LinkeDepartment of Biosciences, University of Oslo, Oslo, Norway.ORCID http://orcid.org/0000-0003-3150-6752

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An intimate interaction between a pair of amino acids, a tyrosine and glycine on neighboring β-strands, has been previously reported to be important for the structural stability of autotransporters. Here, we show that the conservation of this interacting pair extends to nearly all major families of outer membrane β-barrel proteins, which are thought to have originated through duplication events involving an ancestral ββ hairpin. We analyzed the function of this motif using the prototypical outer membrane protein OmpX. Stopped-flow fluorescence shows that two folding processes occur in the millisecond time regime, the rates of which are reduced in the tyrosine mutant. Folding assays further demonstrate a reduction in the yield of folded protein for the mutant compared to the wild-type, as well as a reduction in thermal stability. Taken together, our data support the idea of an evolutionarily conserved 'folding core' that affects the folding, membrane insertion, and thermal stability of outer membrane protein β-barrels.

Indexed as

Evolution, MolecularAmino Acid MotifsAmino Acid SequenceBacterial Outer Membrane ProteinsEscherichia coliEscherichia coli ProteinsGlycineLipid BilayersModels, MolecularProtein FoldingProtein Structure, SecondarySequence AlignmentTyrosineBacterial Outer Membrane ProteinsEscherichia coli ProteinsGlycineLipid BilayersTyrosine

Identifiers

PMID28771529
PMCPMC5542473

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.