Evidence map›Paper›PMID 28771119›Full record

ArticleInternational journal of systematic and evolutionary microbiology2017

Silvanigrella aquatica gen. nov., sp. nov., isolated from a freshwater lake, description of Silvanigrellaceae fam. nov. and Silvanigrellales ord. nov., reclassification of the order Bdellovibrionales in the class Oligoflexia, reclassification of the families Bacteriovoracaceae and Halobacteriovoraceae in the new order Bacteriovoracales ord. nov., and reclassification of the family Pseudobacteriovoracaceae in the order Oligoflexales.

Martin W Hahn, Johanna Schmidt, Ulrike Koll, Manfred Rohde, Susanne Verbarg, Alexandra Pitt, Ryosuke Nakai, Takeshi Naganuma, Elke Lang

Abstract read
In one paragraph

Article in International journal of systematic and evolutionary microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

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  7. Complete genome sequence ofMicrobiology resource announcements · 2024
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  11. International journal of systematic and evolutionary microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Martin W HahnResearch Institute for Limnology, University of Innsbruck, Mondseestrasse 9, 5310 Mondsee, Austria.
Johanna SchmidtResearch Institute for Limnology, University of Innsbruck, Mondseestrasse 9, 5310 Mondsee, Austria.
Ulrike KollResearch Institute for Limnology, University of Innsbruck, Mondseestrasse 9, 5310 Mondsee, Austria.
Manfred RohdeCentral Facility for Microscopy, Helmholtz Centre for Infection Research, Inhoffenstraße 7, 38124 Braunschweig, Germany.
Susanne VerbargLeibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstraße 7B, 38124 Braunschweig, Germany.
Alexandra PittResearch Institute for Limnology, University of Innsbruck, Mondseestrasse 9, 5310 Mondsee, Austria.
Ryosuke NakaiGenetic Strains Research Center, National Institute of Genetics, 1111 Yata, Mishima 411-0801, Japan.
Takeshi NaganumaGraduate School of Biosphere Science, Hiroshima University, 1-4-4 Kagamiyama, Higahi-hiroshima 739-8528, Japan.
Elke LangLeibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstraße 7B, 38124 Braunschweig, Germany.

Funding

Austrian Science Fund FWF I 482
6 · The paper itself

Abstract

The unusual chemo-organoheterotrophic proteobacterial strain MWH-Nonnen-W8redT was isolated from a lake located in the Black Forest (Schwarzwald), Germany, by using the filtration-acclimatization method. Phylogenetic analyses based on the 16S rRNA gene sequence of the strain could not provide clear hints on classification of the strain in one of the current classes of the phylum Proteobacteria. Whole-genome sequencing resulted in a genome size of 3.5 Mbp and revealed a quite low DNA G+C content of 32.6 mol%. In-depth phylogenetic analyses based on alignments of 74 protein sequences of a phylogenetically broad range of taxa suggested assignment of the strain to a new order of the class Oligoflexia. These analyses also suggested that the order Bdellovibrionales should be transferred from the class Deltaproteobacteria to the class Oligoflexia, that this order should be split into two orders, and that the family Pseudobacteriovoracaceae should be transferred from the order Bdellovibrionales to the order Oligoflexales. We propose to establish for strain MWH-Nonnen-W8redT (=DSM 23856T=CCUG 58639T) the novel species and genus Silvanigrella aquatica gen. nov., sp. nov. to be placed in the new family Silvanigrellaceae fam. nov. of the new order Silvanigrellales ord. nov.

Indexed as

PhylogenyBacterial Typing TechniquesBase CompositionDeltaproteobacteriaDNA, BacterialGermanyLakesRNA, Ribosomal, 16SSequence Analysis, DNADNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID28771119
PMCPMC5627705

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.