ArticlePlant physiology2017
Construction and Optimization of a Large Gene Coexpression Network in Maize Using RNA-Seq Data.
Article in Plant physiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.
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Who cites it
32 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Network aggregation improves gene function prediction of grapevine gene co-expression networks.Plant molecular biology · 2020Pooled it
- Dual metabolic checkpoint blockadeBioactive materials · 2027Article
- Transcriptome profiling of maize transcription factor mutants to probe gene regulatory network predictions.G3 (Bethesda, Md.) · 2025Article
- Hydrogen Therapy Reverses Cancer-Associated Fibroblasts Phenotypes and Remodels Stromal Microenvironment to Stimulate Systematic Anti-Tumor Immunity.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024Article
- Exploring large-scale gene coexpression networks in peach (Horticulture research · 2024Article
- Decoding the gene regulatory network of endosperm differentiation in maize.Nature communications · 2024Article
- Recent advances in exploring transcriptional regulatory landscape of crops.Frontiers in plant science · 2024Review
- A gene network-driven approach to infer novel pathogenicity-associated genes: application tomSystems · 2023Article
- Advances of Apetala2/Ethylene Response Factors in Regulating Development and Stress Response in Maize.International journal of molecular sciences · 2023Review
- From Classical to Modern Computational Approaches to Identify Key Genetic Regulatory Components in Plant Biology.International journal of molecular sciences · 2023Review
- Design, execution, and interpretation of plant RNA-seq analyses.Frontiers in plant science · 2023Review
- Approaches in Gene Coexpression Analysis in Eukaryotes.Biology · 2022Review
- Gene Co-Expression Network Tools and Databases for Crop Improvement.Plants (Basel, Switzerland) · 2022Review
- Effect of aneuploidy of a non-essential chromosome on gene expression in maize.The Plant journal : for cell and molecular biology · 2022Article
- Addressing noise in co-expression network construction.Briefings in bioinformatics · 2022Review
- Robust normalization and transformation techniques for constructing gene coexpression networks from RNA-seq data.Genome biology · 2022Article
- Modern Approaches for Transcriptome Analyses in Plants.Advances in experimental medicine and biology · 2021Article
- Article
- Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice.BMC plant biology · 2020Article
- Epigenetic Regulation of ABA-Induced Transcriptional Responses in Maize.G3 (Bethesda, Md.) · 2020Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
With the emergence of massively parallel sequencing, genomewide expression data production has reached an unprecedented level. This abundance of data has greatly facilitated maize research, but may not be amenable to traditional analysis techniques that were optimized for other data types. Using publicly available data, a gene coexpression network (GCN) can be constructed and used for gene function prediction, candidate gene selection, and improving understanding of regulatory pathways. Several GCN studies have been done in maize (
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Registered trials
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