ArticleBMC genomics2017
Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing.
Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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Who cites it
32 citing papers in PubMed, 66 citations in OpenAlex.
- Small but big player: the important role of microRNAs in legume crops.Molecular genetics and genomics : MGG · 2026Review
- miRNA-Mediated Regulation ofInternational journal of molecular sciences · 2025Article
- Functional roles of miR862b in regulating soybean resistance to Heterodera glycines.Plant cell reports · 2025Article
- Roles of microRNAs and histone modifications in enhancing stress tolerance in soybean and their applications in molecular breeding.Breeding science · 2025Article
- Biochemical Defence of Plants against Parasitic Nematodes.Plants (Basel, Switzerland) · 2024Review
- Functional Identification of miR2119 TargetingJournal of agricultural and food chemistry · 2024Article
- Species-specific microRNA discovery and target prediction in the soybean cyst nematode.Scientific reports · 2023Article
- Research progress on the functional study of host resistance-related genes against Heterodera glycines.Crop health · 2023Review
- P-TarPmiR accurately predicts plant-specific miRNA targets.Scientific reports · 2023Article
- Functional Characterization of Ubiquitination Genes in the Interaction of Soybean-International journal of molecular sciences · 2022Article
- miR778 mediates gene expression, histone modification, and DNA methylation during cyst nematode parasitism.Plant physiology · 2022Article
- MicroRNA-mediated post-transcriptional regulation of Pinus pinaster response and resistance to pinewood nematode.Scientific reports · 2022Article
- Using the Knowledge of Post-transcriptional Regulations to Guide Gene Selections for Molecular Breeding in Soybean.Frontiers in plant science · 2022Review
- Soybean miR159International journal of molecular sciences · 2021Article
- Review
- Identification and molecular characterization of miRNAs and their target genes associated with seed development through small RNA sequencing in chickpea.Functional & integrative genomics · 2021Article
- Identification of the Complex Interplay Between Nematode-Related lncRNAs and Their Target Genes inFrontiers in plant science · 2021Article
- Elucidating micro RNAs role in different plant-pathogen interactions.Molecular biology reports · 2020Review
- Stress induced dynamic adjustment of conserved miR164:NAC module.Plant-environment interactions (Hoboken, N.J.) · 2020Article
- Reduction of Phakopsora pachyrhizi infection on soybean through host- and spray-induced gene silencing.Molecular plant pathology · 2020Article
Corrections and comments
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Authors and funding
6 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe soybean cyst nematode (SCN), Heterodera glycines, is one of the most devastating diseases limiting soybean production worldwide. It is known that small RNAs, including microRNAs (miRNAs) and small interfering RNAs (siRNAs), play important roles in regulating plant growth and development, defense against pathogens, and responses to environmental changes.
resultsIn order to understand the role of soybean miRNAs during SCN infection, we analyzed 24 small RNA libraries including three biological replicates from two soybean cultivars (SCN susceptible KS4607, and SCN HG Type 7 resistant KS4313N) that were grown under SCN-infested and -noninfested soil at two different time points (SCN feeding establishment and egg production). In total, 537 known and 70 putative novel miRNAs in soybean were identified from a total of 0.3 billion reads (average about 13.5 million reads for each sample) with the programs of Bowtie and miRDeep2 mapper. Differential expression analyses were carried out using edgeR to identify miRNAs involved in the soybean-SCN interaction. Comparative analysis of miRNA profiling indicated a total of 60 miRNAs belonging to 25 families that might be specifically related to cultivar responses to SCN. Quantitative RT-PCR validated similar miRNA interaction patterns as sequencing results.
conclusionThese findings suggest that miRNAs are likely to play key roles in soybean response to SCN. The present work could provide a framework for miRNA functional identification and the development of novel approaches for improving soybean SCN resistance in future studies.
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