Evidence map›Paper›PMID 28768482›Full record

ArticleBMC genomics2017

Comparative genomic analysis and characterization of incompatibility group FIB plasmid encoded virulence factors of Salmonella enterica isolated from food sources.

Bijay K Khajanchi, Nur A Hasan, Seon Young Choi, Jing Han, Shaohua Zhao, Rita R Colwell, Carl E Cerniglia, Steven L Foley

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 40 citations in OpenAlex.

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  8. Antimicrobial Resistance and Genomic Characterization ofTransboundary and emerging diseases · 2024
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  9. Genetic relatedness and virulence potential ofFrontiers in microbiology · 2024
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  10. Genomic Insights into the First Emergence ofInfection and drug resistance · 2024
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  13. Characterisation ofInternational journal of environmental research and public health · 2022
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  16. Genetic Characterization ofMicroorganisms · 2021
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  17. Virulence Comparison ofMicroorganisms · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Bijay K KhajanchiU.S. Food and Drug Administration, National Center for Toxicological Research, Jefferson, AR, USA. bijay.khajanchi@fda.hhs.gov.ORCID 0000-0002-8616-6903
Nur A HasanCenter of Bioinformatics and Computational Biology, University of Maryland Institute of Advanced Computer Studies, University of Maryland, College Park, MD, USA.
Seon Young ChoiCenter of Bioinformatics and Computational Biology, University of Maryland Institute of Advanced Computer Studies, University of Maryland, College Park, MD, USA.
Jing HanU.S. Food and Drug Administration, National Center for Toxicological Research, Jefferson, AR, USA.
Shaohua ZhaoU.S. Food and Drug Administration, Center for Veterinary Medicine, Laurel, MD, USA.
Rita R ColwellCenter of Bioinformatics and Computational Biology, University of Maryland Institute of Advanced Computer Studies, University of Maryland, College Park, MD, USA.
Carl E CernigliaU.S. Food and Drug Administration, National Center for Toxicological Research, Jefferson, AR, USA.
Steven L FoleyU.S. Food and Drug Administration, National Center for Toxicological Research, Jefferson, AR, USA. steven.foley@fda.hhs.gov.
National Center for Toxicological Research · USCosmos Corporation (United States) · USCenter for Veterinary Medicine · US

Funding

Study of the Cell-specific Inflammasome Responses During Defense Against Gram-negative BacteriaP20GM103625 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI SMELTZER, MARK S · 2012 to 2021
$21.5M
Arkansas Center for Clinical and Translational ResearchUL1TR000039 · NCATS · UNIV OF ARKANSAS FOR MED SCIS · PI BECK, CORNELIA MARIE, JAMES, LAURA P · 2012 to 2014
$10.0M
NCATS NIH HHS UL1 TR000039NIGMS NIH HHS P20 GM103625
6 · The paper itself

Abstract

backgroundThe degree to which the chromosomal mediated iron acquisition system contributes to virulence of many bacterial pathogens is well defined. However, the functional roles of plasmid encoded iron acquisition systems, specifically Sit and aerobactin, have yet to be determined for Salmonella spp. In a recent study, Salmonella enterica strains isolated from different food sources were sequenced on the Illumina MiSeq platform and found to harbor the incompatibility group (Inc) FIB plasmid. In this study, we examined sequence diversity and the contribution of factors encoded on the IncFIB plasmid to the virulence of S. enterica.

resultsWhole genome sequences of seven S. enterica isolates were compared to genomes of serovars of S. enterica isolated from food, animal, and human sources. SeqSero analysis predicted that six strains were serovar Typhimurium and one was Heidelberg. Among the S. Typhimurium strains, single nucleotide polymorphism (SNP)-based phylogenetic analyses revealed that five of the isolates clustered as a single monophyletic S. Typhimurium subclade, while one of the other strains branched with S. Typhimurium from a bovine source. DNA sequence based phylogenetic diversity analyses showed that the IncFIB plasmid-encoded Sit and aerobactin iron acquisition systems are conserved among bacterial species including S. enterica. The IncFIB plasmid was transferred to an IncFIB plasmid deficient strain of S. enterica by conjugation. The transconjugant SE819::IncFIB persisted in human intestinal epithelial (Caco-2) cells at a higher rate than the recipient SE819. Genes of the Sit and aerobactin operons in the IncFIB plasmid were differentially expressed in iron-rich and iron-depleted growth media.

conclusionsMinimal sequence diversity was detected in the Sit and aerobactin operons in the IncFIB plasmids present among different bacterial species, including foodborne Salmonella strains. IncFIB plasmid encoded factors play a role during infection under low-iron conditions in host cells.

Indexed as

Food MicrobiologyGenomicsBacterial ProteinsCaco-2 CellsHumansIronKineticsPhylogenyPlasmidsSalmonella entericaVirulence FactorsBacterial ProteinsIronVirulence FactorsHuman intestinal epithelial (Caco-2) cellsIncompatibility group FIB plasmidIron acquisition systems (SitABCD and aerobactin)Salmonella entericaSingle nucleotide polymorphism (SNP)VirulenceWhole genome sequencing (WGS)

Identifiers

PMID28768482
PMCPMC5541697
OpenAlexW2741277561

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.