Evidence map›Paper›PMID 28768414›Full record

ArticleJournal of proteome research2017

Quantitative Temporal in Vivo Proteomics Deciphers the Transition of Virus-Driven Myeloid Cells into M2 Macrophages.

Derek R Clements, John Patrick Murphy, Andra Sterea, Barry E Kennedy, Youra Kim, Erin Helson, Shekoufeh Almasi, Namit Holay, Prathyusha Konda, Joao A Paulo and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of proteome research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Derek R Clements
John Patrick Murphy
Andra Sterea
Barry E Kennedy
Youra Kim
Erin HelsonFaculty of Medicine, University of Toronto , Toronto, Ontario M5S 1A8, Canada.
Shekoufeh Almasi
Namit Holay
Prathyusha Konda
Joao A PauloDepartment of Cell Biology, Harvard Medical School , Boston, Massachusetts 02115, United States.
Tanveer Sharif
Patrick W Lee
Michael P WeekesCambridge Institute for Medical Research, University of Cambridge , Cambridge CB2 0XY, United Kingdom.
Steven P GygiDepartment of Cell Biology, Harvard Medical School , Boston, Massachusetts 02115, United States.
Shashi GujarCentre for Innovative and Collaborative Health Systems Research, IWK Health Centre , Halifax, Nova Scotia B3K 6R8, Canada.ORCID 0000-0002-5427-0829
Harvard University · USIzaak Walton Killam Health Centre · CAUniversity of Cambridge · GBUniversity of Toronto · CA

Funding

Resolving the role of nicotine-mediated phosphorylation on pancreatic fibrosisK01DK098285 · NIDDK · HARVARD MEDICAL SCHOOL · PI PAULO, JOAO A · 2013 to 2017
$638k
NIDDK NIH HHS K01 DK098285Wellcome Trust
6 · The paper itself

Abstract

Myeloid cells play a central role in the context of viral eradication, yet precisely how these cells differentiate throughout the course of acute infections is poorly understood. In this study, we have developed a novel quantitative temporal in vivo proteomics (QTiPs) platform to capture proteomic signatures of temporally transitioning virus-driven myeloid cells directly in situ, thus taking into consideration host-virus interactions throughout the course of an infection. QTiPs, in combination with phenotypic, functional, and metabolic analyses, elucidated a pivotal role for inflammatory CD11b

Indexed as

Host-Pathogen InteractionsAnimalsAntigens, LyBiomarkersCD11b AntigenCell DifferentiationCell ProliferationGene DeletionGene Expression RegulationGene OntologyMacrophagesMiceMice, Inbred C57BLMolecular Sequence AnnotationMyeloid CellsOrthoreovirus, MammalianAntigens, LyBiomarkersCcr2 protein, mouseCD11b AntigenLy-6C antigen, mouseLy6G antigen, mouseReceptors, CCR2infectionM2-like macrophagesmyeloid cellsproteomics

Identifiers

PMID28768414
PMCPMC5648240
OpenAlexW2745048408

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.