Evidence map›Paper›PMID 28767660›Full record

ArticlePloS one2017

Novel co-culture plate enables growth dynamic-based assessment of contact-independent microbial interactions.

Thomas J Moutinho, John C Panagides, Matthew B Biggs, Gregory L Medlock, Glynis L Kolling, Jason A Papin

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Hypersensitivity of chitin degradation to initial species densities due to monomer diffusion.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  4. Mathematical Modeling ofInternational journal of molecular sciences · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Thomas J MoutinhoDepartment of Biomedical Engineering, University of Virginia, Charlottesville, Virginia, United States of America.
John C PanagidesDepartment of Biomedical Engineering, University of Virginia, Charlottesville, Virginia, United States of America.
Matthew B BiggsDepartment of Biomedical Engineering, University of Virginia, Charlottesville, Virginia, United States of America.
Gregory L MedlockDepartment of Biomedical Engineering, University of Virginia, Charlottesville, Virginia, United States of America.
Glynis L KollingDepartment of Biomedical Engineering, University of Virginia, Charlottesville, Virginia, United States of America.
Jason A PapinDepartment of Biomedical Engineering, University of Virginia, Charlottesville, Virginia, United States of America.ORCID http://orcid.org/0000-0002-2769-5805
University of Virginia · US

Funding

Mapping and predicting metabolic fluxes between the ileal microbiome and hostR01GM108501 · NIGMS · UNIVERSITY OF VIRGINIA · PI PAPIN, JASON · 2014 to 2017
$1.4M
Transdisciplinary Big Data Science Training at UVaT32LM012416 · NLM · UNIVERSITY OF VIRGINIA · PI BROWN, DONALD E, LOUGHRAN, THOMAS P. · 2016 to 2020
$1.3M
NIGMS NIH HHS R01 GM108501NLM NIH HHS T32 LM012416
6 · The paper itself

Abstract

Interactions between microbes are central to the dynamics of microbial communities. Understanding these interactions is essential for the characterization of communities, yet challenging to accomplish in practice. There are limited available tools for characterizing diffusion-mediated, contact-independent microbial interactions. A practical and widely implemented technique in such characterization involves the simultaneous co-culture of distinct bacterial species and subsequent analysis of relative abundance in the total population. However, distinguishing between species can be logistically challenging. In this paper, we present a low-cost, vertical membrane, co-culture plate to quantify contact-independent interactions between distinct bacterial populations in co-culture via real-time optical density measurements. These measurements can be used to facilitate the analysis of the interaction between microbes that are physically separated by a semipermeable membrane yet able to exchange diffusible molecules. We show that diffusion across the membrane occurs at a sufficient rate to enable effective interaction between physically separate cultures. Two bacterial species commonly found in the cystic fibrotic lung, Pseudomonas aeruginosa and Burkholderia cenocepacia, were co-cultured to demonstrate how this plate may be implemented to study microbial interactions. We have demonstrated that this novel co-culture device is able to reliably generate real-time measurements of optical density data that can be used to characterize interactions between microbial species.

Indexed as

Bacteriological TechniquesBurkholderia cenocepaciaCoculture TechniquesMicrobial InteractionsPseudomonas aeruginosa

Identifiers

PMID28767660
PMCPMC5540398
OpenAlexW2953143617

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.