Evidence map›Paper›PMID 28765215›Full record

ArticlemBio2017

Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea.

Connor T Skennerton, Karuna Chourey, Ramsunder Iyer, Robert L Hettich, Gene W Tyson, Victoria J Orphan

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in mBio, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 102 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Connor T SkennertonDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California, USA.ORCID 0000-0003-1320-4873
Karuna ChoureyChemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Ramsunder IyerGenome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA.
Robert L HettichChemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Gene W TysonAustralian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, Queensland, Australia.
Victoria J OrphanDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California, USA vorphan@gps.caltech.edu.
California Institute of Technology · USOak Ridge National Laboratory · USThe University of Queensland · AUUniversity of Tennessee at Knoxville · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The anaerobic oxidation of methane by anaerobic methanotrophic (ANME) archaea in syntrophic partnership with deltaproteobacterial sulfate-reducing bacteria (SRB) is the primary mechanism for methane removal in ocean sediments. The mechanism of their syntrophy has been the subject of much research as traditional intermediate compounds, such as hydrogen and formate, failed to decouple the partners. Recent findings have indicated the potential for extracellular electron transfer from ANME archaea to SRB, though it is unclear how extracellular electrons are integrated into the metabolism of the SRB partner. We used metagenomics to reconstruct eight genomes from the globally distributed SEEP-SRB1 clade of ANME partner bacteria to determine what genomic features are required for syntrophy. The SEEP-SRB1 genomes contain large multiheme cytochromes that were not found in previously described free-living SRB and also lack periplasmic hydrogenases that may prevent an independent lifestyle without an extracellular source of electrons from ANME archaea. Metaproteomics revealed the expression of these cytochromes at

Indexed as

AnaerobiosisArchaeaBacteriaElectron TransportGenome, ArchaealGenome, BacterialGeologic SedimentsHydrogenMetagenomicsMethaneOxidation-ReductionPhylogenySulfatesHydrogenMethaneSulfatesanaerobic oxidation of methaneANMEAOMextracellular electron transfermethane seepsmultiheme cytochromeSEEP-SRB1sulfate-reducing bacteria

Identifiers

PMID28765215
PMCPMC5539420
OpenAlexW2741580058

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.