Evidence map›Paper›PMID 28765142›Full record

ArticleEMBO reports2017

A retained intron in the 3'-UTR of

Tejaswini Sharangdhar, Yoichiro Sugimoto, Jacqueline Heraud-Farlow, Sandra M Fernández-Moya, Janina Ehses, Igor Ruiz de Los Mozos, Jernej Ule, Michael A Kiebler

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
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  5. Review
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  8. Article
  9. Review
  10. Article
  11. Article
  12. The lncRNAGenes & development · 2024
    Article
  13. Review
  14. Article
  15. RNA in axons, dendrites, synapses and beyond.Frontiers in molecular neuroscience · 2024
    Review
  16. Article
  17. Article
  18. Article
  19. Synapse-Enriched mThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Tejaswini SharangdharDivision of Cell Biology, Biomedical Center, LMU Munich, Martinsried, Germany.
Yoichiro SugimotoDepartment of Molecular Neuroscience, University College London Institute of Neurology, London, UK.
Jacqueline Heraud-FarlowDK RNA Biology, M.F. Perutz Laboratories, Vienna, Austria.
Sandra M Fernández-MoyaDivision of Cell Biology, Biomedical Center, LMU Munich, Martinsried, Germany.
Janina EhsesDivision of Cell Biology, Biomedical Center, LMU Munich, Martinsried, Germany.
Igor Ruiz de Los MozosDepartment of Molecular Neuroscience, University College London Institute of Neurology, London, UK.ORCID 0000-0003-4097-6422
Jernej UleDepartment of Molecular Neuroscience, University College London Institute of Neurology, London, UK.ORCID 0000-0002-2452-4277
Michael A KieblerDivision of Cell Biology, Biomedical Center, LMU Munich, Martinsried, Germany mkiebler@lmu.de.ORCID 0000-0002-8850-6297
Ludwig-Maximilians-Universität München · DEThe Francis Crick Institute · GBMax Perutz Labs · AT

Funding

Wellcome TrustWellcome Trust 103760/Z/14/Z
6 · The paper itself

Abstract

Dendritic localization and hence local mRNA translation contributes to synaptic plasticity in neurons. Staufen2 (Stau2) is a well-known neuronal double-stranded RNA-binding protein (dsRBP) that has been implicated in dendritic mRNA localization. The specificity of Stau2 binding to its target mRNAs remains elusive. Using individual-nucleotide resolution CLIP (iCLIP), we identified significantly enriched Stau2 binding to the 3'-UTRs of 356 transcripts. In 28 (7.9%) of those, binding occurred to a retained intron in their 3'-UTR The strongest bound 3'-UTR intron was present in the longest isoform of

Indexed as

3' Untranslated RegionsIntronsAnimalsCalmodulinDendritesHeLa CellsHippocampusHumansMiceNerve Tissue ProteinsNeuronsRatsRNA-Binding ProteinsRNA, Double-StrandedRNA, Messenger3' Untranslated RegionsCalmodulinNerve Tissue ProteinsRNA-Binding ProteinsRNA, Double-StrandedRNA, Messengerstau2 protein, mouseStau2 protein, ratCalm3intronneuronal activityneuronal mRNA regulationStau2

Identifiers

PMID28765142
PMCPMC5623867
OpenAlexW2742026508

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.