Evidence map›Paper›PMID 28763494›Full record

ArticlePloS one2017

Global assessment of small RNAs reveals a non-coding transcript involved in biofilm formation and attachment in Acinetobacter baumannii ATCC 17978.

Laura Álvarez-Fraga, Soraya Rumbo-Feal, Astrid Pérez, Manuel J Gómez, Carmen Gayoso, Juan A Vallejo, Emily J Ohneck, Jaione Valle, Luis A Actis, Alejandro Beceiro and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Recent advances in host models in studying virulence factors and pathogenesis ofFrontiers in cellular and infection microbiology · 2025
    Review
  9. Article
  10. Review
  11. Article
  12. Regulation of biofilm formation by non-coding RNA in prokaryotes.Current research in pharmacology and drug discovery · 2023
    Review
  13. Transcriptome Analysis ofInternational journal of environmental research and public health · 2022
    Article
  14. TheFrontiers in molecular biosciences · 2022
    Review
  15. Review
  16. Article
  17. Review
  18. Insights Into Mechanisms of Biofilm Formation inFrontiers in cellular and infection microbiology · 2020
    Review
  19. COLFrontiers in microbiology · 2019
    Article
  20. Infection and drug resistance · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Laura Álvarez-FragaDepartamento de Microbiología, Instituto de Investigación Biomédica (INIBIC), Complejo Hospitalario Universitario (CHUAC), A Coruña, Spain.
Soraya Rumbo-FealDepartamento de Microbiología, Instituto de Investigación Biomédica (INIBIC), Complejo Hospitalario Universitario (CHUAC), A Coruña, Spain.
Astrid PérezDepartamento de Microbiología, Instituto de Investigación Biomédica (INIBIC), Complejo Hospitalario Universitario (CHUAC), A Coruña, Spain.
Manuel J GómezDepartment of Molecular Evolution, Center for Astrobiology, INTA-CSIC, Torrejón de Ardoz, Madrid, Spain.
Carmen GayosoDepartamento de Microbiología, Instituto de Investigación Biomédica (INIBIC), Complejo Hospitalario Universitario (CHUAC), A Coruña, Spain.
Juan A VallejoDepartamento de Microbiología, Instituto de Investigación Biomédica (INIBIC), Complejo Hospitalario Universitario (CHUAC), A Coruña, Spain.
Emily J OhneckDepartment of Microbiology, Miami University, Oxford, Ohio, United States of America.
Jaione ValleDepartamento de Biofilms Microbianos, Instituto de Agrobiotecnología, Navarra, Spain.
Luis A ActisDepartment of Microbiology, Miami University, Oxford, Ohio, United States of America.
Alejandro BeceiroDepartamento de Microbiología, Instituto de Investigación Biomédica (INIBIC), Complejo Hospitalario Universitario (CHUAC), A Coruña, Spain.
Germán BouDepartamento de Microbiología, Instituto de Investigación Biomédica (INIBIC), Complejo Hospitalario Universitario (CHUAC), A Coruña, Spain.
Margarita PozaDepartamento de Microbiología, Instituto de Investigación Biomédica (INIBIC), Complejo Hospitalario Universitario (CHUAC), A Coruña, Spain.ORCID http://orcid.org/0000-0001-9423-7268
Complexo Hospitalario Universitario A Coruña · ESMiami University · USAgrobiotechnology Institute · ESSpanish National Centre for Cardiovascular Research · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many strains of Acinetobacter baumannii have been described as being able to form biofilm. Small non-coding RNAs (sRNAs) control gene expression in many regulatory circuits in bacteria. The aim of the present work was to provide a global description of the sRNAs produced both by planktonic and biofilm-associated (sessile) cells of A. baumannii ATCC 17978, and to compare the corresponding gene expression profiles to identify sRNAs molecules associated to biofilm formation and virulence. sRNA was extracted from both planktonic and sessile cells and reverse transcribed. cDNA was subjected to 454-pyrosequencing using the GS-FLX Titanium chemistry. The global analysis of the small RNA transcriptome revealed different sRNA expression patterns in planktonic and biofilm associated cells, with some of the transcripts only expressed or repressed in sessile bacteria. A total of 255 sRNAs were detected, with 185 of them differentially expressed in the different types of cells. A total of 9 sRNAs were expressed only in biofilm cells, while the expression of other 21 coding regions were repressed only in biofilm cells. Strikingly, the expression level of the sRNA 13573 was 120 times higher in biofilms than in planktonic cells, an observation that prompted us to further investigate the biological role of this non-coding transcript. Analyses of an isogenic mutant and over-expressing strains revealed that the sRNA 13573 gene is involved in biofilm formation and attachment to A549 human alveolar epithelial cells. The present work serves as a basis for future studies examining the complex regulatory network that regulate biofilm biogenesis and attachment to eukaryotic cells in A. baumannii ATCC 17978.

Indexed as

BiofilmsGene Expression ProfilingA549 CellsAcinetobacter baumanniiCell Line, TumorDNA, ComplementaryGene Expression Regulation, BacterialHumansMicroscopy, Electron, ScanningRNA, BacterialRNA, Small UntranslatedVirulenceDNA, ComplementaryRNA, BacterialRNA, Small Untranslated

Identifiers

PMID28763494
PMCPMC5538643
OpenAlexW2741689824

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.