Evidence map›Paper›PMID 28762640›Full record

ArticleBiotechnology journal2017

Exploring Bacterial Carboxylate Reductases for the Reduction of Bifunctional Carboxylic Acids.

Anna N Khusnutdinova, Robert Flick, Ana Popovic, Greg Brown, Anatoli Tchigvintsev, Boguslaw Nocek, Kevin Correia, Jeong C Joo, Radhakrishnan Mahadevan, Alexander F Yakunin

Open access · greenAbstract read
In one paragraph

Article in Biotechnology journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Biocatalytic Reduction Reactions from a Chemist's Perspective.Angewandte Chemie (International ed. in English) · 2021
    Review
  10. Biocatalysis: Enzymatic Synthesis for Industrial Applications.Angewandte Chemie (International ed. in English) · 2021
    Review
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Anna N KhusnutdinovaDepartment of Chemical Engineering and Applied Chemistry, University of Toronto, 200 College Street, ON, M5S 3E5, Canada.
Robert FlickDepartment of Chemical Engineering and Applied Chemistry, University of Toronto, 200 College Street, ON, M5S 3E5, Canada.
Ana PopovicDepartment of Chemical Engineering and Applied Chemistry, University of Toronto, 200 College Street, ON, M5S 3E5, Canada.
Greg BrownDepartment of Chemical Engineering and Applied Chemistry, University of Toronto, 200 College Street, ON, M5S 3E5, Canada.
Anatoli TchigvintsevDepartment of Chemical Engineering and Applied Chemistry, University of Toronto, 200 College Street, ON, M5S 3E5, Canada.
Boguslaw NocekMidwest Center for Structural Genomics and Structural Biology Center, Biosciences Division, Argonne National Laboratory, Argonne, IL, 60439, USA.
Kevin CorreiaDepartment of Chemical Engineering and Applied Chemistry, University of Toronto, 200 College Street, ON, M5S 3E5, Canada.
Jeong C JooCenter for Bio-Based Chemistry, Division of Convergence Chemistry, Korea Research Institute of Chemical Technology, 141 Gajeong-ro, Yuseong-gu, Daejeon, 34114, Republic of Korea.
Radhakrishnan MahadevanDepartment of Chemical Engineering and Applied Chemistry, University of Toronto, 200 College Street, ON, M5S 3E5, Canada.
Alexander F YakuninDepartment of Chemical Engineering and Applied Chemistry, University of Toronto, 200 College Street, ON, M5S 3E5, Canada.
University of Toronto · CAArgonne National Laboratory · USKorea Research Institute of Chemical Technology · KR

Funding

Midwest Center for Structural GenomicsU54GM094585 · NIGMS · UNIVERSITY OF CHICAGO · PI OTWINOWSKI, ZBYSZEK · 2010 to 2014
$33.7M
The Midwest Center for Structural Genomics - Community ResourceR24GM115586 · NIGMS · UNIVERSITY OF CHICAGO · PI JOACHIMIAK, ANDRZEJ · 2015 to 2017
$2.8M
NIGMS NIH HHS R24 GM115586NIGMS NIH HHS U54 GM094585
6 · The paper itself

Abstract

Carboxylic acid reductases (CARs) selectively reduce carboxylic acids to aldehydes using ATP and NADPH as cofactors under mild conditions. Although CARs attracts significant interest, only a few enzymes have been characterized to date, whereas the vast majority of CARs have yet to be examined. Herein the authors report that 12 bacterial CARs reduces a broad range of bifunctional carboxylic acids containing oxo-, hydroxy-, amino-, or second carboxyl groups with several enzymes showing activity toward 4-hydroxybutanoic (4-HB) and adipic acids. These CARs exhibits significant reductase activity against substrates whose second functional group is separated from the carboxylate by at least three carbons with both carboxylate groups being reduced in dicarboxylic acids. Purified CARs supplemented with cofactor regenerating systems (for ATP and NADPH), an inorganic pyrophosphatase, and an aldo-keto reductase catalyzes a high conversion (50-76%) of 4-HB to 1,4-butanediol (1,4-BDO) and adipic acid to 1,6-hexanediol (1,6-HDO). Likewise, Escherichia coli strains expressing eight different CARs efficiently reduces 4-HB to 1,4-BDO with 50-95% conversion, whereas adipic acid is reduced to a mixture of 6-hydroxyhexanoic acid (6-HHA) and 1,6-HDO. Thus, our results illustrate the broad biochemical diversity of bacterial CARs and their compatibility with other enzymes for applications in biocatalysis.

Indexed as

Bacterial ProteinsOxidoreductasesAdenosine TriphosphateAdipatesCarboxylic AcidsEscherichia coliHydroxybutyratesMetabolic EngineeringNADPAdenosine TriphosphateAdipatesadipic acidBacterial Proteinscarboxylic acid reductaseCarboxylic AcidsHydroxybutyratesNADPOxidoreductases1,4-butanediol1,6-hexanediol4-hydroxybutyrateadipic acidcarboxylic acid reductase

Identifiers

PMID28762640
PMCPMC5681412
OpenAlexW2739549564

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.