Evidence map›Paper›PMID 28761163›Full record

ArticleScientific reports2017

The basal translation rate of authentic HIV-1 RNA is regulated by 5'UTR nt-pairings at junction of R and U5.

I Boeras, B Seufzer, S Brady, A Rendahl, X Heng, K Boris-Lawrie

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Role of RNA structural plasticity in modulating HIV-1 genome packaging and translation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Review
  4. Article
  5. Review
  6. Editorial: RNA machines.Frontiers in genetics · 2023
    Article
  7. Review
  8. Review
  9. Article
  10. HIV-1 hypermethylated guanosine cap licenses specialized translation unaffected by mTOR.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Article
  12. 5'-Cap sequestration is an essential determinant of HIV-1 genome packaging.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. Article
  14. Review
  15. HIV Rev-isited.Open biology · 2020
    Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

I BoerasUniversity of Minnesota, Department of Veterinary and Biomedical Sciences, 1971 Commonwealth, Saint Paul, MN, 55108, USA.
B SeufzerUniversity of Minnesota, Department of Veterinary and Biomedical Sciences, 1971 Commonwealth, Saint Paul, MN, 55108, USA.
S BradyUniversity of Missouri, Department of Biochemistry, 503 S. College Ave, Columbia, MO, 65211, USA.
A RendahlUniversity of Minnesota, Department of Veterinary and Biomedical Sciences, 1971 Commonwealth, Saint Paul, MN, 55108, USA.
X HengUniversity of Missouri, Department of Biochemistry, 503 S. College Ave, Columbia, MO, 65211, USA. hengx@missouri.edu.ORCID 0000-0001-8448-3596
K Boris-LawrieUniversity of Minnesota, Department of Veterinary and Biomedical Sciences, 1971 Commonwealth, Saint Paul, MN, 55108, USA. kbl@umn.edu.
University of Minnesota · USMissouri College · USUniversity of Missouri · US

Funding

The Center for HIV RNA Studies (CRNA)P50GM103297 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DAYIE, KWAKU · 2012 to 2016
$21.7M
NIGMS NIH HHS P50 GM103297
6 · The paper itself

Abstract

The paradigm protein synthesis rate is regulated by structural complexity of the 5'untranslated region (UTR) derives from bacterial and other riboswitches. In-solution, HIV-1 5'UTR forms two interchangeable long-range nucleotide (nt) -pairings, one sequesters the gag start codon promoting dimerization while the other sequesters the dimer initiation signal preventing dimerization. While the effect of these nt-pairings on dimerization and packaging has been documented their effect on authentic HIV translation in cellulo has remained elusive until now. HIV

Indexed as

Protein Biosynthesis5' Untranslated RegionsAmino Acid SubstitutionCodon, InitiatorDimerizationHEK293 CellsHIV-1HumansModels, MolecularNucleic Acid ConformationRNA, ViralVirus Assembly5' Untranslated RegionsCodon, InitiatorRNA, Viral

Identifiers

PMID28761163
PMCPMC5537239
OpenAlexW2738195525

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.