Evidence map›Paper›PMID 28760995›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

SPF45-related splicing factor for phytochrome signaling promotes photomorphogenesis by regulating pre-mRNA splicing in

Ruijiao Xin, Ling Zhu, Patrice A Salomé, Estefania Mancini, Carine M Marshall, Frank G Harmon, Marcelo J Yanovsky, Detlef Weigel, Enamul Huq

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 1 pooled it
13.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 1 synthesis or guideline pooled it, 76 citations in OpenAlex.

  1. Pooled it
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  11. Light controls mesophyll-specific post-transcriptional splicing of photoregulatory genes by AtPRMT5.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  18. SWAP1-SFPS-RRC1 splicing factor complex modulates pre-mRNA splicing to promote photomorphogenesis inProceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Ruijiao XinDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712.
Ling ZhuDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712.
Patrice A SaloméDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, D-72076 Tübingen, Germany.
Estefania ManciniFundación Instituto Leloir, Instituto de Investigaciones Bioquímicas de Buenos Aires-Consejo Nacional de Investigaciones Científicas y Técnicas de Argentina, C1405BWE Buenos Aires, Argentina.
Carine M MarshallPlant Gene Expression Center, U.S. Department of Agriculture Agricultural Research Service, Albany, CA 94710.ORCID 0000-0001-7178-4664
Frank G HarmonPlant Gene Expression Center, U.S. Department of Agriculture Agricultural Research Service, Albany, CA 94710.
Marcelo J YanovskyFundación Instituto Leloir, Instituto de Investigaciones Bioquímicas de Buenos Aires-Consejo Nacional de Investigaciones Científicas y Técnicas de Argentina, C1405BWE Buenos Aires, Argentina.
Detlef WeigelDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, D-72076 Tübingen, Germany.ORCID 0000-0002-2114-7963
Enamul HuqDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712; huq@austin.utexas.edu.ORCID 0000-0001-7692-5139
The University of Texas at Austin · USConsejo Nacional de Investigaciones Científicas y Técnicas · ARMax Planck Institute for Developmental Biology · DEPlant Gene Expression Center · US

Funding

Phytochrome-mediated light signaling in plantsR01GM114297 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI HUQ, ENAMUL · 2015 to 2018
$1.2M
NIGMS NIH HHS R01 GM114297
6 · The paper itself

Abstract

Light signals regulate plant growth and development by controlling a plethora of gene expression changes. Posttranscriptional regulation, especially pre-mRNA processing, is a key modulator of gene expression; however, the molecular mechanisms linking pre-mRNA processing and light signaling are not well understood. Here we report a protein related to the human splicing factor 45 (SPF45) named splicing factor for phytochrome signaling (SFPS), which directly interacts with the photoreceptor phytochrome B (phyB). In response to light, SFPS-RFP (red fluorescent protein) colocalizes with phyB-GFP in photobodies.

Indexed as

ArabidopsisArabidopsis ProteinsPhytochrome BPlant DevelopmentRNA, PlantRNA PrecursorsRNA SplicingRNA Splicing FactorsSignal TransductionArabidopsis ProteinsPHYB protein, ArabidopsisPhytochrome BRNA, PlantRNA PrecursorsRNA Splicing FactorsArabidopsisphotomorphogenesisphytochrome signalingpre-mRNA splicingsplicing factor

Identifiers

PMID28760995
PMCPMC5565451
OpenAlexW2740839656

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.