Evidence map›Paper›PMID 28760200›Full record

ArticleeLife2017

RNA-dependent stabilization of SUV39H1 at constitutive heterochromatin.

Whitney L Johnson, William T Yewdell, Jason C Bell, Shannon M McNulty, Zachary Duda, Rachel J O'Neill, Beth A Sullivan, Aaron F Straight

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 161 citations in OpenAlex.

  1. Cross-species incompatibilities offer new insights into the functional consequences of satellite DNA evolution.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
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  11. Downregulation of Gene Expression by Alpha Satellite Transcripts.International journal of molecular sciences · 2025
    Article
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  17. Article
  18. Identification of chromatin-associated RNAs at human centromeres.bioRxiv : the preprint server for biology · 2025
    Article
  19. Article
  20. Review

52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Whitney L JohnsonDepartment of Biochemistry, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0002-1442-3309
William T YewdellDepartment of Biochemistry, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0002-5712-1896
Jason C BellDepartment of Biochemistry, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0001-5480-7975
Shannon M McNultyDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, United States.
Zachary DudaDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, United States.
Rachel J O'NeillDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, United States.
Beth A SullivanDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, United States.ORCID 0000-0001-5216-4603
Aaron F StraightDepartment of Biochemistry, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0001-5885-7881
Stanford University · USDuke University · USUniversity of Connecticut · US

Funding

Supplement to Enhance Wellness and Resiliency in the Graduate EnvironmentT32GM007276 · NIGMS · STANFORD UNIVERSITY · PI MORRISON, ASHBY J. · 1985 to 2023
$32.9M
ORGANIZATION AND FUNCTIONS OF CELLULAR STRUCTUREST32GM007184 · NIGMS · DUKE UNIVERSITY · PI JINKS-ROBERTSON, SUE · 1985 to 2019
$18.2M
Dicentric chromosome formation and stability in humansR01GM098500 · NIGMS · DUKE UNIVERSITY · PI SULLIVAN, BETH A · 2012 to 2015
$1.3M
NIGMS NIH HHS R01 GM098500NIGMS NIH HHS T32 GM007184NIGMS NIH HHS T32 GM007276
6 · The paper itself

Abstract

Heterochromatin formed by the SUV39 histone methyltransferases represses transcription from repetitive DNA sequences and ensures genomic stability. How SUV39 enzymes localize to their target genomic loci remains unclear. Here, we demonstrate that chromatin-associated RNA contributes to the stable association of SUV39H1 with constitutive heterochromatin in human cells. We find that RNA associated with mitotic chromosomes is concentrated at pericentric heterochromatin, and is encoded, in part, by repetitive α-satellite sequences, which are retained in cis at their transcription sites. Purified SUV39H1 directly binds nucleic acids through its chromodomain; and in cells, SUV39H1 associates with α-satellite RNA transcripts. Furthermore, nucleic acid binding mutants destabilize the association of SUV39H1 with chromatin in mitotic and interphase cells - effects that can be recapitulated by RNase treatment or RNA polymerase inhibition - and cause defects in heterochromatin function. Collectively, our findings uncover a previously unrealized function for chromatin-associated RNA in regulating constitutive heterochromatin in human cells.

Indexed as

Cell LineHeterochromatinHumansMethyltransferasesProtein BindingRepressor ProteinsRNAHeterochromatinMethyltransferasesRepressor ProteinsRNASUV39H1 protein, humancell biologychromatinchromosomesgenesheterochromatinhistone methylationhumannoncoding RNASUV39H1

Identifiers

PMID28760200
PMCPMC5538822
OpenAlexW2740520136

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.