Evidence map›Paper›PMID 28759053›Full record

ArticleNature medicine2017

The eukaryotic gut virome in hematopoietic stem cell transplantation: new clues in enteric graft-versus-host disease.

Jérôme Legoff, Matthieu Resche-Rigon, Jerome Bouquet, Marie Robin, Samia N Naccache, Séverine Mercier-Delarue, Scot Federman, Erik Samayoa, Clotilde Rousseau, Prescillia Piron and 4 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 141 citations in OpenAlex.

  1. Trial
  2. Potential of Fecal Microbiota Transplantation to Prevent Acute GVHD: Analysis from a Phase II Trial.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
    Trial
  3. Randomized Double-Blind Phase II Trial of Fecal Microbiota Transplantation Versus Placebo in Allogeneic Hematopoietic Cell Transplantation and AML.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2023
    Trial
  4. Article
  5. Review
  6. Picobirnavirus: how do you find where it's hiding?Critical reviews in microbiology · 2026
    Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Optimal GVHD Prophylaxis.Advances in experimental medicine and biology · 2025
    Review
  17. Article
  18. Article
  19. Article
  20. Article

36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Jérôme LegoffUniversity of Paris Diderot, Sorbonne Paris Cité, Inserm U941, Microbiology Laboratory, Hôpital Saint-Louis, APHP, Paris, France.
Matthieu Resche-RigonUniversity of Paris Diderot, Sorbonne Paris Cité, Inserm U1153, ECSTRA Team, Biostatistics Unit, APHP, Hôpital Saint-Louis, Paris, France.
Jerome BouquetUCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California, USA.
Marie RobinUniversity of Paris Descartes, EA4065, Microbiology Laboratory, Hôpital Saint-Louis, APHP, Paris, France.
Samia N NaccacheUCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California, USA.
Séverine Mercier-DelarueUniversity of Paris Diderot, Sorbonne Paris Cité, Inserm U941, Microbiology Laboratory, Hôpital Saint-Louis, APHP, Paris, France.
Scot FedermanUCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California, USA.
Erik SamayoaUCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California, USA.
Clotilde RousseauUniversity of Paris Descartes, EA4065, Microbiology Laboratory, Hôpital Saint-Louis, APHP, Paris, France.
Prescillia PironUniversity of Paris Diderot, Sorbonne Paris Cité, Inserm U1153, ECSTRA Team, Biostatistics Unit, APHP, Hôpital Saint-Louis, Paris, France.
Nathalie KapelLaboratoire de Coprologie Fonctionnelle, APHP, GH Pitié-Salpêtrière Charles Foix, EA4065, Université Paris Descartes, Paris, France.
François SimonUniversity of Paris Diderot, Sorbonne Paris Cité, Inserm U941, Microbiology Laboratory, Hôpital Saint-Louis, APHP, Paris, France.
Gérard SociéUniversity of Paris Diderot, Sorbonne Paris Cité, Paris, France, and Hematology and Transplantation, INSERM Unité Mixte de Recherche Scientifique 1160, Paris, France.
Charles Y ChiuUCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California, USA.ORCID http://orcid.org/0000-0003-2915-2094
Inserm · FRUniversity of California, San Francisco · USDélégation Paris 5 · FRUniversité Paris Cité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Much attention has been focused on the role of the bacterial microbiome in human health, but the virome is understudied. Although previously investigated in individuals with inflammatory bowel diseases or solid-organ transplants, virome dynamics in allogeneic hematopoietic stem cell transplantation (HSCT) and enteric graft-versus-host disease (GVHD) remain unexplored. Here we characterize the longitudinal gut virome in 44 recipients of HSCT using metagenomics. A viral 'bloom' was identified, and significant increases were demonstrated in the overall proportion of vertebrate viral sequences following transplantation (P = 0.02). Increases in both the rates of detection (P < 0.0001) and number of sequences (P = 0.047) of persistent DNA viruses (anelloviruses, herpesviruses, papillomaviruses and polyomaviruses) over time were observed in individuals with enteric GVHD relative to those without, a finding accompanied by a reduced phage richness (P = 0.01). Picobirnaviruses were detected in 18 individuals (40.9%), more frequently before or within a week after transplant than at later time points (P = 0.008). In a time-dependent Cox proportional-hazards model, picobirnaviruses were predictive of the occurrence of severe enteric GVHD (hazard ratio, 2.66; 95% confidence interval (CI) = 1.46-4.86; P = 0.001), and correlated with higher fecal levels of two GVHD severity markers, calprotectin and α1-antitrypsin. These results reveal a progressive expansion of vertebrate viral infections over time following HSCT, and they suggest an unexpected association of picobirnaviruses with early post-transplant GVHD.

Indexed as

Hematopoietic Stem Cell TransplantationAdolescentAdultAgedalpha 1-AntitrypsinAnelloviridaeDNA, ViralFecesFemaleGastrointestinal MicrobiomeGraft vs Host DiseaseHerpesviridaeHumansIntestinal DiseasesIntestinesLeukocyte L1 Antigen Complexalpha 1-AntitrypsinDNA, ViralLeukocyte L1 Antigen Complex

Identifiers

PMID28759053
OpenAlexW2739584330

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.