Evidence map›Paper›PMID 28755027›Full record

ArticleMicrobial ecology2018

Genetic Structure of the Rice Blast Pathogen (Magnaporthe oryzae) over a Decade in North Central California Rice Fields.

Deborah Pagliaccia, Ryan Z Urak, Frank Wong, LeAnn I Douhan, Christopher A Greer, Georgios Vidalakis, Greg W Douhan

Abstract read
In one paragraph

Article in Microbial ecology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Chinese Populations ofJournal of fungi (Basel, Switzerland) · 2024
    Article
  3. Article
  4. Identification of Pyruvate Dehydrogenase E1 as a Potential Target againstInternational journal of molecular sciences · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Deborah PagliacciaDepartment of Plant Pathology and Microbiology, University of California, Riverside, CA, 92521, USA. deborahp@ucr.edu.ORCID http://orcid.org/0000-0002-5516-3144
Ryan Z UrakDepartment of Plant Pathology and Microbiology, University of California, Riverside, CA, 92521, USA.
Frank WongDepartment of Plant Pathology and Microbiology, University of California, Riverside, CA, 92521, USA.
LeAnn I DouhanDepartment of Plant Pathology and Microbiology, University of California, Riverside, CA, 92521, USA.
Christopher A GreerCooperative Extension, University of California, Sutter-Yuba, Yuba City, CA, 95991, USA.
Georgios VidalakisDepartment of Plant Pathology and Microbiology, University of California, Riverside, CA, 92521, USA.
Greg W DouhanDepartment of Plant Pathology and Microbiology, University of California, Riverside, CA, 92521, USA.

Funding

USDA-NIFA/UC Division of Ag. And Nat'l Resources (UCANR) SA7279, AMD 2
6 · The paper itself

Abstract

Rice blast, caused by the ascomycete Magnaporthe oryzae, is one of the most destructive rice diseases worldwide. Even though the disease has been present in California since 1996, there is no data for the pathogen population biology in the state. Using amplified fragment length polymorphisms and mating-type markers, the M. oryzae population diversity was investigated using isolates collected when the disease was first established in California and isolates collected a decade later. While in the 1990 samples, a single multilocus genotype (MLG) was identified (MLG1), over a decade later, we found 14 additional MLGs in the 2000 isolates. Some of these MLGs were found to infect the only rice blast-resistant cultivar (M-208) available for commercial production in California. The same samples also had a significant decrease of MLG1. MLG1 was found infecting the resistant rice cultivar M-208 on one occasion whereas MLG7 was the most common genotype infecting the M-208. MLG7 was identified in the 2000 samples, and it was not present in the M. oryzae population a decade earlier. Our results demonstrate a significant increase in genotypic diversity over time with no evidence of sexual reproduction and suggest a recent introduction of new virulent race(s) of the pathogen. In addition, our data could provide information regarding the durability of the Pi-z resistance gene of the M-208. This information will be critical to plant breeders in developing strategies for deployment of other rice blast resistance genes/cultivars in the future.

Indexed as

CaliforniaGenetic VariationGenotypeMagnaportheOryzaPhylogenyPlant DiseasesAFLPCaliforniaPi-z genePopulation structurePyricularia oryzaeRice blast disease

Identifiers

PMID28755027
PMCPMC5742603

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.