Evidence map›Paper›PMID 28754988›Full record

ArticleScientific reports2017

Zinc binding to RNA recognition motif of TDP-43 induces the formation of amyloid-like aggregates.

Cyrille Garnier, François Devred, Deborah Byrne, Rémy Puppo, Andrei Yu Roman, Soazig Malesinski, Andrey V Golovin, Régine Lebrun, Natalia N Ninkina, Philipp O Tsvetkov

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
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  4. Identifying interactions between TDP-43's N-terminal and RNA-binding domains.Protein science : a publication of the Protein Society · 2025
    Article
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  6. Review
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  15. Article
  16. Mechanism of ZnBiomolecules · 2021
    Article
  17. Article
  18. Metals in ALS TDP-43 Pathology.International journal of molecular sciences · 2021
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Cyrille GarnierMécanismes Moléculaires dans les Démences Neurodégénératives, Université de Montpellier, EPHE, INSERM, U1198, F-34095, Montpellier, France.
François DevredAix-Marseille Univ, Inserm, CRO2 UMR_S 911, Faculté de Pharmacie, 13385, Marseille, France.
Deborah ByrneInstitut de Microbiologie de la Méditerranée, CNRS, FR3479, Aix-Marseille Université, Marseille, France.
Rémy PuppoInstitut de Microbiologie de la Méditerranée, CNRS, FR3479, Aix-Marseille Université, Marseille, France.
Andrei Yu RomanAix-Marseille Univ, Inserm, CRO2 UMR_S 911, Faculté de Pharmacie, 13385, Marseille, France.ORCID 0000-0002-2498-0803
Soazig MalesinskiAix-Marseille Univ, Inserm, CRO2 UMR_S 911, Faculté de Pharmacie, 13385, Marseille, France.
Andrey V GolovinLomonosov Moscow State University, Moscow, 119991, Russian Federation.
Régine LebrunInstitut de Microbiologie de la Méditerranée, CNRS, FR3479, Aix-Marseille Université, Marseille, France.
Natalia N NinkinaInstitute of Physiologically Active Compounds, RAS, 142432, Chernogolovka, Russian Federation. ninkinan@cf.ac.uk.
Philipp O TsvetkovAix-Marseille Univ, Inserm, CRO2 UMR_S 911, Faculté de Pharmacie, 13385, Marseille, France. philipp.tsvetkov@univ-amu.fr.
Inserm · FRCentre National de la Recherche Scientifique · FRInstitute of Physiologically Active Compounds · RULomonosov Moscow State University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aggregation of TDP-43 (transactive response DNA binding protein 43 kDa) is a hallmark of certain forms of amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD). Moreover, intracellular TDP-43-positive inclusions are often found in other neurodegenerative diseases. Recently it was shown that zinc ions can provoke the aggregation of endogenous TDP-43 in cells, allowing to assume a direct interaction of TDP-43 with zinc ions. In this work, we investigated zinc binding to the 102-269 TDP-43 fragment, which comprise the two RNA recognition motifs. Using isothermal titration calorimetry, mass spectrometry, and differential scanning fluorimetry, we showed that zinc binds to this TDP-43 domain with a dissociation constant in the micromolar range and modifies its tertiary structure leading to a decrease of its thermostability. Moreover, the study by dynamic light scattering and negative stain electron microscopy demonstrated that zinc ions induce auto-association process of this TDP-43 fragment into rope-like structures. These structures are thioflavin-T-positive allowing to hypothesize the direct implication of zinc ions in pathological aggregation of TDP-43.

Indexed as

AmyloidBinding SitesDNA-Binding ProteinsHumansMolecular Docking SimulationProtein BindingZincAmyloidDNA-Binding ProteinsTARDBP protein, humanZinc

Identifiers

PMID28754988
PMCPMC5533730
OpenAlexW2736247826

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.