Evidence map›Paper›PMID 28754704›Full record

ArticleApplied and environmental microbiology2017

Metagenomic Analysis of Dairy Bacteriophages: Extraction Method and Pilot Study on Whey Samples Derived from Using Undefined and Defined Mesophilic Starter Cultures.

Musemma K Muhammed, Witold Kot, Horst Neve, Jennifer Mahony, Josué L Castro-Mejía, Lukasz Krych, Lars H Hansen, Dennis S Nielsen, Søren J Sørensen, Knut J Heller and 2 more

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Longitudinal Study ofApplied and environmental microbiology · 2023
    Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
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  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Musemma K MuhammedDepartment of Food Science, University of Copenhagen, Frederiksberg, Denmark.
Witold KotDepartment of Biology, University of Copenhagen, Copenhagen, Denmark.
Horst NeveDepartment of Microbiology and Biotechnology, Max Rubner-Institut, Kiel, Germany.
Jennifer MahonySchool of Microbiology, University College Cork, Cork, Ireland.
Josué L Castro-MejíaDepartment of Food Science, University of Copenhagen, Frederiksberg, Denmark.
Lukasz KrychDepartment of Food Science, University of Copenhagen, Frederiksberg, Denmark.
Lars H HansenDepartment of Environmental Science, Aarhus University, Roskilde, Denmark.
Dennis S NielsenDepartment of Food Science, University of Copenhagen, Frederiksberg, Denmark.
Søren J SørensenDepartment of Biology, University of Copenhagen, Copenhagen, Denmark.
Knut J HellerDepartment of Microbiology and Biotechnology, Max Rubner-Institut, Kiel, Germany.
Douwe van SinderenSchool of Microbiology, University College Cork, Cork, Ireland.
Finn K VogensenDepartment of Food Science, University of Copenhagen, Frederiksberg, Denmark fkv@food.ku.dk.ORCID http://orcid.org/0000-0003-2151-7802

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite being potentially highly useful for characterizing the biodiversity of phages, metagenomic studies are currently not available for dairy bacteriophages, partly due to the lack of a standard procedure for phage extraction. We optimized an extraction method that allows the removal of the bulk protein from whey and milk samples with losses of less than 50% of spiked phages. The protocol was applied to extract phages from whey in order to test the notion that members of

Indexed as

AnimalsBacteriophagesHigh-Throughput Nucleotide SequencingMetagenomicsMilkPilot ProjectsSiphoviridaeWheyabundancebacteriophagesCaudoviralesdairydiversityLactococcus lactisLeuconostocmesophilicmetaviromeSiphoviridaestarter culturewhey

Identifiers

PMID28754704
PMCPMC5601343

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.