Evidence map›Paper›PMID 28753623›Full record

ArticlePloS one2017

Solution NMR structure of the TRIM21 B-box2 and identification of residues involved in its interaction with the RING domain.

Amélie Wallenhammar, Madhanagopal Anandapadamanaban, Alexander Lemak, Claudio Mirabello, Patrik Lundström, Björn Wallner, Maria Sunnerhagen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
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  6. A Comparison of Bonded and Nonbonded Zinc(II) Force Fields with NMR Data.International journal of molecular sciences · 2023
    Article
  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Amélie WallenhammarDivision of Chemistry, Department of Physics, Chemistry and Biology, Linköping University, Linköping, Sweden.
Madhanagopal AnandapadamanabanDivision of Chemistry, Department of Physics, Chemistry and Biology, Linköping University, Linköping, Sweden.
Alexander LemakPrincess Margaret Cancer Center and Department of Medical Biophysics, University of Toronto, Toronto, Canada.
Claudio MirabelloDivision of Bioinformatics, Department of Physics, Chemistry and Biology, Linköping University, Linköping, Sweden.
Patrik LundströmDivision of Chemistry, Department of Physics, Chemistry and Biology, Linköping University, Linköping, Sweden.
Björn WallnerDivision of Bioinformatics, Department of Physics, Chemistry and Biology, Linköping University, Linköping, Sweden.
Maria SunnerhagenDivision of Chemistry, Department of Physics, Chemistry and Biology, Linköping University, Linköping, Sweden.ORCID http://orcid.org/0000-0002-0492-5890
Linköping University · SEUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tripartite motif-containing (TRIM) proteins are defined by the sequential arrangement of RING, B-box and coiled-coil domains (RBCC), where the B-box domain is a unique feature of the TRIM protein family. TRIM21 is an E3 ubiquitin-protein ligase implicated in innate immune signaling by acting as an autoantigen and by modifying interferon regulatory factors. Here we report the three-dimensional solution structure of the TRIM21 B-box2 domain by nuclear magnetic resonance (NMR) spectroscopy. The structure of the B-box2 domain, comprising TRIM21 residues 86-130, consists of a short α-helical segment with an N-terminal short β-strand and two anti-parallel β-strands jointly found the core, and adopts a RING-like fold. This ββαβ core largely defines the overall fold of the TRIM21 B-box2 and the coordination of one Zn2+ ion stabilizes the tertiary structure of the protein. Using NMR titration experiments, we have identified an exposed interaction surface, a novel interaction patch where the B-box2 is likely to bind the N-terminal RING domain. Our structure together with comparisons with other TRIM B-box domains jointly reveal how its different surfaces are employed for various modular interactions, and provides extended understanding of how this domain relates to flanking domains in TRIM proteins.

Indexed as

Computational BiologyMagnetic Resonance SpectroscopyModels, TheoreticalProtein BindingTripartite Motif ProteinsTripartite Motif Proteins

Identifiers

PMID28753623
PMCPMC5533445
OpenAlexW2741620700

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.