Evidence map›Paper›PMID 28752963›Full record

ArticleEnvironmental microbiology2017

Systematic genetic dissection of chitin degradation and uptake in Vibrio cholerae.

Chelsea A Hayes, Triana N Dalia, Ankur B Dalia

Open access · greenAbstract read
In one paragraph

Article in Environmental microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 53 citations in OpenAlex.

  1. Temperate phages limit their own propagation under spatial constraint in biofilms on chitin.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  5. bioRxiv : the preprint server for biology · 2025
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  18. Microbial genomics · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Chelsea A HayesDepartment of Biology, Indiana University, Bloomington, IN, USA.
Triana N DaliaDepartment of Biology, Indiana University, Bloomington, IN, USA.
Ankur B DaliaDepartment of Biology, Indiana University, Bloomington, IN, USA.
Indiana University Bloomington · US

Funding

Vibrio cholerae-chitin interactions and their role in cholera transmission and evolutionK22AI118863 · NIAID · TRUSTEES OF INDIANA UNIVERSITY · PI DALIA, ANKUR · 2016 to 2017
$268k
NIAID NIH HHS K22 AI118863
6 · The paper itself

Abstract

Vibrio cholerae is a natural resident of the aquatic environment, where a common nutrient is the chitinous exoskeletons of microscopic crustaceans. Chitin utilization requires chitinases, which degrade this insoluble polymer into soluble chitin oligosaccharides. These oligosaccharides also serve as an inducing cue for natural transformation in Vibrio species. There are 7 predicted endochitinase-like genes in the V. cholerae genome. Here, we systematically dissect the contribution of each gene to growth on chitin as well as induction of natural transformation. Specifically, we created a strain that lacks all 7 putative chitinases and from this strain, generated a panel of strains where each expresses a single chitinase. We also generated expression plasmids to ectopically express all 7 chitinases in our chitinase deficient strain. Through this analysis, we found that low levels of chitinase activity are sufficient for natural transformation, while growth on insoluble chitin as a sole carbon source requires more robust and concerted chitinase activity. We also assessed the role that the three uptake systems for the chitin degradation products GlcNAc, (GlcNAc)

Indexed as

AcetylglucosamineAnimalsChitinChitinasesCrustaceaGene Expression Regulation, BacterialOligosaccharidesSequence DeletionVibrio choleraeAcetylglucosamineChitinChitinasesOligosaccharides

Identifiers

PMID28752963
PMCPMC5647239
OpenAlexW2950236867

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.