Evidence map›Paper›PMID 28752839›Full record

ArticleModern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc2017

Development and validation of a novel clinical fluorescence in situ hybridization assay to detect JAK2 and PD-L1 amplification: a fluorescence in situ hybridization assay for JAK2 and PD-L1 amplification.

Meixuan Chen, Mariacarla Andreozzi, Barbara Pockaj, Michael T Barrett, Idris Tolgay Ocal, Ann E McCullough, Maria E Linnaus, James M Chang, Jennifer H Yearley, Lakshmanan Annamalai and 1 more

Open access · bronzeAbstract readValidation Study
PubMed Publisher
In one paragraph

Article in Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. The roles of PD-1/PD-L1 in the prognosis and immunotherapy of prostate cancer.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Review
  8. Article
  9. Review
  10. Review
  11. JAK2/PD-L1/PD-L2 (9p24.1) amplifications in renal cell carcinomas with sarcomatoid transformation: implications for clinical management.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2019
    Article
  12. Article
  13. Article
  14. Expression Patterns, Prognostic Value, and Intratumoral Heterogeneity of PD-L1 and PD-1 in Thymoma and Thymic Carcinoma.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2018
    Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Meixuan ChenPublic Laboratory, Key Laboratory of Breast Cancer Prevention and Therapy, Ministry of Education, National Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital; Tianjin Medical University, Tianjin, China.ORCID 0000-0002-7957-0721
Mariacarla AndreozziDepartment of Medicine, Mayo Clinic, Phoenix, AZ, USA.
Barbara PockajDepartment of Surgery, Mayo Clinic, Phoenix, AZ, USA.
Michael T BarrettDepartment of Medicine, Mayo Clinic, Phoenix, AZ, USA.
Idris Tolgay OcalDepartment of Pathology, Mayo Clinic, Phoenix, AZ, USA.
Ann E McCulloughDepartment of Pathology, Mayo Clinic, Phoenix, AZ, USA.
Maria E LinnausDepartment of Surgery, Mayo Clinic, Phoenix, AZ, USA.
James M ChangDepartment of Surgery, Mayo Clinic, Phoenix, AZ, USA.
Jennifer H YearleyMerck Research Laboratories, Palo Alto, CA, USA.
Lakshmanan AnnamalaiMerck Research Laboratories, Palo Alto, CA, USA.
Karen S AndersonCenter for Personalized Diagnostics, Biodesign Institute, Arizona State University, Tempe, AZ, USA.
Mayo Clinic Hospital · USWinnMed · USMerck & Co., Inc., Rahway, NJ, USA (United States) · USTianjin Medical University Cancer Institute and Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The amplification of chromosome 9p24.1 encoding PD-L1, PD-L2, and JAK2 has been reported in multiple types of cancer and is associated with poor outcome, upregulation of PD-L1, and activation of the JAK/STAT pathway. We have developed a novel fluorescence in situ hybridization assay which combines 3 probes mapping to 9p24.1 with a commercial chromosome 9 centromere (CEN9) probe for detection of the JAK2/9p24.1 amplification. JAK2 fluorescence in situ hybridization was compared with array-based comparative genomic hybridization in 34 samples of triple negative breast cancer tumor. By array-based comparative genomic hybridization, 15 had 9p24.1 copy-number gain (log

Indexed as

AdultAgedB7-H1 AntigenBiomarkers, TumorFemaleGene AmplificationHumansIn Situ Hybridization, FluorescenceJanus Kinase 2Middle AgedTriple Negative Breast NeoplasmsB7-H1 AntigenBiomarkers, TumorCD274 protein, humanJAK2 protein, humanJanus Kinase 2

Identifiers

PMID28752839
OpenAlexW2741922362

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.