Evidence map›Paper›PMID 28752667›Full record

ArticleMolecular microbiology2017

Genetic networks controlled by the bacterial replication initiator and transcription factor DnaA in Bacillus subtilis.

Tracy A Washington, Janet L Smith, Alan D Grossman

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Genomic epidemiological analysis reveals new insights into the resurgence ofFrontiers in cellular and infection microbiology · 2025
    Article
  5. mSystems · 2024
    Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Phosphorylation of theFrontiers in microbiology · 2018
    Article
  13. Structure and Function of theFrontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Tracy A WashingtonDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Janet L SmithDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Alan D GrossmanDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.ORCID http://orcid.org/0000-0002-8235-7227
Massachusetts Institute of Technology · US

Funding

Cell Cycle and Sporulation in Bacillis SubtillisR37GM041934 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GROSSMAN, ALAN D · 2009 to 2017
$4.8M
INITITATION OF SPORULATION IN BACILLUS SUBTILISR01GM041934 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GROSSMAN, ALAN D · 1989 to 2007
$2.6M
NIGMS NIH HHS R01 GM041934NIGMS NIH HHS R37 GM041934
6 · The paper itself

Abstract

DnaA is the widely conserved bacterial AAA+ ATPase that functions as both the replication initiator and a transcription factor. In many organisms, DnaA controls expression of its own gene and likely several others during growth and in response to replication stress. To evaluate the effects of DnaA on gene expression, separate from its role in replication initiation, we analyzed changes in mRNA levels in Bacillus subtilis cells with and without dnaA, using engineered strains in which dnaA is not essential. We found that dnaA was required for many of the changes in gene expression in response to replication stress. We also found that dnaA indirectly affected expression of several regulons during growth, including those controlled by the transcription factors Spo0A, AbrB, PhoP, SinR, RemA, Rok and YvrH. These effects were largely mediated by the effects of DnaA on expression of sda. DnaA activates transcription of sda, and Sda inhibits histidine protein kinases required for activation of the transcription factor Spo0A. We also found that loss of dnaA caused a decrease in the development of genetic competence. Together, our results indicate that DnaA plays an important role in modulating cell physiology, separate from its role in replication initiation.

Indexed as

Adenosine TriphosphatasesBacillus subtilisBacterial ProteinsDNA-Binding ProteinsDNA ReplicationGene Expression Regulation, BacterialGene Regulatory NetworksProtein BindingTranscription FactorsTranscription, GeneticAdenosine TriphosphatasesBacterial ProteinsDnaA protein, BacteriaDNA-Binding ProteinsTranscription Factors

Identifiers

PMID28752667
PMCPMC5607098
OpenAlexW1515437401

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.