Evidence map›Paper›PMID 28752534›Full record

ArticleMolecular microbiology2017

Structural basis for substrate selection by the translocation and assembly module of the β-barrel assembly machinery.

Rebecca S Bamert, Karl Lundquist, Hyea Hwang, Chaille T Webb, Takoya Shiota, Christopher J Stubenrauch, Mathew J Belousoff, Robert J A Goode, Ralf B Schittenhelm, Richard Zimmerman and 3 more

Abstract read
In one paragraph

Article in Molecular microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. POTRA domains of the TamA insertase interact with the outer membrane and modulate membrane properties.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  4. Article
  5. Review
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  7. Review
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  9. Article
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  11. Article
  12. Review
  13. Article
  14. Article
  15. Presence of substrate aids lateral gate separation in LptD.Biochimica et biophysica acta. Biomembranes · 2020
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Rebecca S BamertInfection & Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, Clayton, VIC 3800, Australia.
Karl LundquistSchool of Physics, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Hyea HwangSchool of Materials Science and Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Chaille T WebbInfection & Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, Clayton, VIC 3800, Australia.ORCID http://orcid.org/0000-0003-0918-0282
Takoya ShiotaInfection & Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, Clayton, VIC 3800, Australia.
Christopher J StubenrauchInfection & Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, Clayton, VIC 3800, Australia.
Mathew J BelousoffInfection & Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, Clayton, VIC 3800, Australia.
Robert J A GoodeMonash Biomedical Proteomics Facility, Biomedicine Discovery Institute and Department of Biochemistry & Molecular Biology, Monash University, Clayton, VIC 3800, Australia.
Ralf B SchittenhelmMonash Biomedical Proteomics Facility, Biomedicine Discovery Institute and Department of Biochemistry & Molecular Biology, Monash University, Clayton, VIC 3800, Australia.
Richard ZimmermanMedical Biochemistry and Molecular Biology, Saarland University, Homburg 66421, Germany.
Martin JungMedical Biochemistry and Molecular Biology, Saarland University, Homburg 66421, Germany.
James C GumbartSchool of Physics, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Trevor LithgowInfection & Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, Clayton, VIC 3800, Australia.ORCID http://orcid.org/0000-0002-0102-7884

Funding

Dynamic characterization of outer-membrane-protein biogenesis by the BAM and TAM complexesR01GM123169 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI GUMBART, JAMES C. · 2017 to 2021
$1.4M
NIGMS NIH HHS R01 GM123169
6 · The paper itself

Abstract

The assembly of proteins into bacterial outer membranes is a key cellular process that we are only beginning to understand, mediated by the β-barrel assembly machinery (BAM). Two crucial elements of that machinery are the core BAM complex and the translocation and assembly module (TAM), with each containing a member of the Omp85 superfamily of proteins: BamA in the BAM complex, TamA in the TAM. Here, we used the substrate protein FimD as a model to assess the selectivity of substrate interactions for the TAM relative to those of the BAM complex. A peptide scan revealed that TamA and BamA bind the β-strands of FimD, and do so selectively. Chemical cross-linking and molecular dynamics are consistent with this interaction taking place between the first and last strand of the TamA barrel domain, providing the first experimental evidence of a lateral gate in TamA: a structural element implicated in membrane protein assembly. We suggest that the lateral gates in TamA and BamA provide different environments for substrates to engage, with the differences observed here beginning to address how the TAM can be more effective than the BAM complex in the folding of some substrate proteins.

Indexed as

Bacterial Outer Membrane ProteinsEscherichia coliEscherichia coli ProteinsMolecular Dynamics SimulationPeptidesProtein FoldingProtein Structural ElementsProtein TransportStructure-Activity RelationshipSubstrate SpecificityBacterial Outer Membrane ProteinsEscherichia coli ProteinsPeptides

Identifiers

PMID28752534
PMCPMC5607099

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.