Evidence map›Paper›PMID 28752344›Full record

ArticleJournal of computer-aided molecular design2017

Molden 2.0: quantum chemistry meets proteins.

Gijs Schaftenaar, Elias Vlieg, Gert Vriend

Abstract read
In one paragraph

Article in Journal of computer-aided molecular design, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
  2. Exploration of the van der Waals Region of the NOThe journal of physical chemistry. A · 2026
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  11. Journal of chemical theory and computation · 2025
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  14. Identifying and controlling the order parameter for ultrafast photoinduced phase transitions in thermosalient materials.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Gijs SchaftenaarCMBI, Radboudumc, Nijmegen, The Netherlands. Gijs.Schaftenaar@radboudumc.nl.
Elias VliegInstitute for Molecules and Materials, Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
Gert VriendCMBI, Radboudumc, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0002-1067-7053

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since the first distribution of Molden in 1995 and the publication of the first article about this software in 2000 work on Molden has continued relentlessly. A few of the many improved or fully novel features such as improved and broadened support for quantum chemistry calculations, preparation of ligands for use in drug design related softwares, and working with proteins for the purpose of ligand docking.

Indexed as

Drug DesignLigandsSoftwareModels, MolecularMolecular Docking SimulationMolecular StructureProtein BindingProteinsQuantitative Structure-Activity RelationshipLigandsProteinsElectron densityElectrostatic potentialMolecular modellingMolecular visualisationProtein manipulationQuantum mechanics

Identifiers

PMID28752344
PMCPMC5633641

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.