Evidence map›Paper›PMID 28751733›Full record

ArticleScientific reports2017

"High-Throughput Characterization of Region-Specific Mitochondrial Function and Morphology".

Joseph R Daniele, Daniel J Esping, Gilbert Garcia, Lee S Parsons, Edgar A Arriaga, Andrew Dillin

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  4. Imaging of Actin Cytoskeletal Integrity During Aging in C. elegans.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
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  8. Measurements of Physiological Stress Responses in C. Elegans.Journal of visualized experiments : JoVE · 2020
    Article
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  10. Article
  11. UPRScience advances · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Joseph R DanieleDepartment of Molecular & Cellular Biology, University of California, Berkeley, Berkeley, CA, 94720-3370, USA.
Daniel J EspingDepartment of Chemistry, University of Minnesota, Minneapolis, MN, 55455, USA.
Gilbert GarciaDepartment of Molecular & Cellular Biology, University of California, Berkeley, Berkeley, CA, 94720-3370, USA.
Lee S ParsonsDepartment of Chemistry, University of Minnesota, Minneapolis, MN, 55455, USA.
Edgar A ArriagaDepartment of Chemistry, University of Minnesota, Minneapolis, MN, 55455, USA. arriaga@umn.edu.
Andrew DillinDepartment of Molecular & Cellular Biology, University of California, Berkeley, Berkeley, CA, 94720-3370, USA.
University of California, Berkeley · USUniversity of Minnesota · US

Funding

Quantitating Mitophagy in Skeletal Muscle ModelsR01AG020866 · NIA · UNIVERSITY OF MINNESOTA TWIN CITIES · PI ARRIAGA, EDGAR A · 2002 to 2021
$5.7M
Subcellular Analysis of Caenohabdibtis elegans Aging ModelsF33AG044080 · NIA · UNIVERSITY OF MINNESOTA · PI ARRIAGA, EDGAR A · 2012 to 2012
$62k
NIA NIH HHS F33 AG044080NIA NIH HHS R01 AG020866
6 · The paper itself

Abstract

The tissue-specific etiology of aging and stress has been elusive due to limitations in data processing of current techniques. Despite that many techniques are high-throughput, they usually use singular features of the data (e.g. whole fluorescence). One technology at the nexus of fluorescence-based screens is large particle flow cytometry ("biosorter"), capable of recording positional fluorescence and object granularity information from many individual live animals. Current processing of biosorter data, however, do not integrate positional information into their analysis and data visualization. Here, we present a bioanalytical platform for the quantification of positional information ("longitudinal profiling") of C. elegans, which we posit embodies the benefits of both high-throughput screening and high-resolution microscopy. We show the use of these techniques in (1) characterizing distinct responses of a transcriptional reporter to various stresses in defined anatomical regions, (2) identifying regions of high mitochondrial membrane potential in live animals, (3) monitoring regional mitochondrial activity in aging models and during development, and (4) screening for regulators of muscle mitochondrial dynamics in a high-throughput format. This platform offers a significant improvement in the quality of high-throughput biosorter data analysis and visualization, opening new options for region-specific phenotypic screening of complex physiological phenomena and mitochondrial biology.

Indexed as

High-Throughput Screening AssaysAgingAnimalsAnimals, Genetically ModifiedCaenorhabditis elegansCaenorhabditis elegans ProteinsEscherichia coliFlow CytometryGene Expression Regulation, DevelopmentalGenes, ReporterGreen Fluorescent ProteinsIntestinesLuminescent ProteinsMembrane Potential, MitochondrialMitochondriaMitochondrial DynamicsCaenorhabditis elegans ProteinsGreen Fluorescent ProteinsLuminescent ProteinsRed Fluorescent Protein

Identifiers

PMID28751733
PMCPMC5532364
OpenAlexW2738109116

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.