Evidence map›Paper›PMID 28751714›Full record

ArticleScientific reports2017

A pilot study demonstrating the altered gut microbiota functionality in stable adults with Cystic Fibrosis.

F Fouhy, N J Ronan, O O'Sullivan, Y McCarthy, A M Walsh, D M Murphy, M Daly, E T Flanagan, C Fleming, M McCarthy and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 2 pooled it
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 2 syntheses or guidelines pooled it, 48 citations in OpenAlex.

  1. Pooled it
  2. Probiotics for people with cystic fibrosis.The Cochrane database of systematic reviews · 2020
    Pooled it
  3. Trial
  4. Article
  5. Article
  6. Observational
  7. Article
  8. Review
  9. Observational
  10. Article
  11. Article
  12. Changes in fecal lipidome after treatment with ivacaftor without changes in microbiome or bile acids.Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society · 2024
    Article
  13. IntestinalmBio · 2024
    Article
  14. AnJournal of bacteriology · 2024
    Article
  15. Review
  16. Article
  17. Review
  18. CFTR and Gastrointestinal Cancers: An Update.Journal of personalized medicine · 2022
    Review
  19. Bypassing the Gut-Lung AxisFrontiers in microbiology · 2022
    Review
  20. Lung and Gut Microbiota Changes Associated withInternational journal of molecular sciences · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

F FouhyTeagasc Food Research Centre, Moorepark, Fermoy, Co. Cork, Ireland.
N J RonanHRB Clinical Research Facility, University College Cork, Cork, Ireland.
O O'SullivanTeagasc Food Research Centre, Moorepark, Fermoy, Co. Cork, Ireland.ORCID 0000-0002-4332-1109
Y McCarthyCork Cystic Fibrosis Centre, University College Cork, Cork University Hospital, Wilton, Cork, Ireland.
A M WalshTeagasc Food Research Centre, Moorepark, Fermoy, Co. Cork, Ireland.
D M MurphyHRB Clinical Research Facility, University College Cork, Cork, Ireland.
M DalyCork Cystic Fibrosis Centre, University College Cork, Cork University Hospital, Wilton, Cork, Ireland.
E T FlanaganHRB Clinical Research Facility, University College Cork, Cork, Ireland.
C FlemingCork Cystic Fibrosis Centre, University College Cork, Cork University Hospital, Wilton, Cork, Ireland.
M McCarthyCork Cystic Fibrosis Centre, University College Cork, Cork University Hospital, Wilton, Cork, Ireland.
C ShorttCork Cystic Fibrosis Centre, University College Cork, Cork University Hospital, Wilton, Cork, Ireland.
J A EustaceHRB Clinical Research Facility, University College Cork, Cork, Ireland.
F ShanahanAPC Microbiome Institute, Cork, Ireland.
M C ReaTeagasc Food Research Centre, Moorepark, Fermoy, Co. Cork, Ireland.
R P RossTeagasc Food Research Centre, Moorepark, Fermoy, Co. Cork, Ireland.
C StantonTeagasc Food Research Centre, Moorepark, Fermoy, Co. Cork, Ireland.
B J PlantHRB Clinical Research Facility, University College Cork, Cork, Ireland. b.plant@ucc.ie.
University College Cork · IETeagasc - The Irish Agriculture and Food Development Authority · IENational University of Ireland · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cystic Fibrosis (CF) and its treatment result in an altered gut microbiota composition compared to non-CF controls. However, the impact of this on gut microbiota functionality has not been extensively characterised. Our aim was to conduct a proof-of-principle study to investigate if measurable changes in gut microbiota functionality occur in adult CF patients compared to controls. Metagenomic DNA was extracted from faecal samples from six CF patients and six non-CF controls and shotgun metagenomic sequencing was performed on the MiSeq platform. Metabolomic analysis using gas chromatography-mass spectrometry was conducted on faecal water. The gut microbiota of the CF group was significantly different compared to the non-CF controls, with significantly increased Firmicutes and decreased Bacteroidetes. Functionality was altered, with higher pathway abundances and gene families involved in lipid (e.g. PWY 6284 unsaturated fatty acid biosynthesis (p = 0.016)) and xenobiotic metabolism (e.g. PWY-5430 meta-cleavage pathway of aromatic compounds (p = 0.004)) in CF patients compared to the controls. Significant differences in metabolites occurred between the two groups. This proof-of-principle study demonstrates that measurable changes in gut microbiota functionality occur in CF patients compared to controls. Larger studies are thus needed to interrogate this further.

Indexed as

Gastrointestinal MicrobiomeAdultAgedCase-Control StudiesCystic FibrosisGene OntologyHumansMetabolic Networks and PathwaysMiddle AgedPhylogenyPilot ProjectsPrincipal Component AnalysisRNA, Ribosomal, 16SXenobioticsYoung AdultRNA, Ribosomal, 16SXenobiotics

Identifiers

PMID28751714
PMCPMC5532234
OpenAlexW2738924012

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.