Evidence map›Paper›PMID 28751649›Full record

ArticleScientific reports2017

Microsatellite markers for multiple Pocillopora genetic lineages offer new insights about coral populations.

Yuichi Nakajima, Patricia H Wepfer, Shohei Suzuki, Yuna Zayasu, Chuya Shinzato, Noriyuki Satoh, Satoshi Mitarai

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yuichi NakajimaMarine Biophysics Unit, Okinawa Institute of Science and Technology Graduate University, Tancha 1919-1, Onna, Okinawa, 904-0495, Japan. yuichi.nakajima@oist.jp.ORCID 0000-0001-6558-5378
Patricia H WepferMarine Biophysics Unit, Okinawa Institute of Science and Technology Graduate University, Tancha 1919-1, Onna, Okinawa, 904-0495, Japan.
Shohei SuzukiOkinawa Marine Science Support Section, Okinawa Institute of Science and Technology Graduate University, Tancha 1919-1, Onna, Okinawa, 904-0495, Japan.
Yuna ZayasuMarine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Tancha 1919-1, Onna, Okinawa, 904-0495, Japan.
Chuya ShinzatoMarine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Tancha 1919-1, Onna, Okinawa, 904-0495, Japan.
Noriyuki SatohMarine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Tancha 1919-1, Onna, Okinawa, 904-0495, Japan.
Satoshi MitaraiMarine Biophysics Unit, Okinawa Institute of Science and Technology Graduate University, Tancha 1919-1, Onna, Okinawa, 904-0495, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Population genetics of the coral genus Pocillopora have been more intensively studied than those of any other reef-building taxon. However, recent investigations have revealed that the current morphological classification is inadequate to represent genetic lineages. In this study, we isolated and characterized novel microsatellite loci from morphological Pocillopora meandrina (Type 1) and Pocillopora acuta (Type 5). Furthermore, we characterized previously reported microsatellite loci. A total of 27 loci (13 novel loci) proved useful for population genetic analyses at two sites in the Ryukyu Archipelago, in the northwestern Pacific. Clonal diversity differed in each genetic lineage. Genetic structure suggested by microsatellites corresponded to clusters in a phylogenetic tree constructed from a mitochondrial open reading frame (mtORF). In addition, we found an unknown mitochondrial haplotype of this mtORF. These microsatellite loci will be useful for studies of connectivity and genetic diversity of Pocillopora populations, and will also support coral reef conservation.

Indexed as

Coral ReefsGenome, MitochondrialMicrosatellite RepeatsPhylogenyAnimalsAnthozoaGenetic LociGenetic VariationHaplotypesJapanOceans and SeasOpen Reading FramesPhylogeography

Identifiers

PMID28751649
PMCPMC5532301

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.