Evidence map›Paper›PMID 28750325›Full record

ArticleVirology2017

Cryo-EM maps reveal five-fold channel structures and their modification by gatekeeper mutations in the parvovirus minute virus of mice (MVM) capsid.

Suriyasri Subramanian, Lindsey J Organtini, Alec Grossman, Phillip P Domeier, Javier O Cifuente, Alexander M Makhov, James F Conway, Anthony D'Abramo, Susan F Cotmore, Peter Tattersall and 1 more

Abstract read
In one paragraph

Article in Virology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Structure of the AAVhu.37 capsid by cryoelectron microscopy.Acta crystallographica. Section F, Structural biology communications · 2020
    Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Suriyasri SubramanianDepartment of Medicine, Pennsylvania State University College of Medicine, 500 University Drive, Hershey, PA 17033, USA.
Lindsey J OrgantiniDepartment of Medicine, Pennsylvania State University College of Medicine, 500 University Drive, Hershey, PA 17033, USA.
Alec GrossmanLake Erie College of Osteopathic Medicine, 1858 West Grandview Blvd., Erie, PA 16509, USA.
Phillip P DomeierDepartment of Medicine, Pennsylvania State University College of Medicine, 500 University Drive, Hershey, PA 17033, USA.
Javier O CifuenteBizkaia Science and Technology Park, Building 800, Derio, Bizkaia, Spain.
Alexander M MakhovDepartment of Structural Biology, University of Pittsburgh School of Medicine, Biomedical Science Tower 3, Room 2047, 3501 5th Ave, Pittsburgh, PA, USA.
James F ConwayDepartment of Structural Biology, University of Pittsburgh School of Medicine, Biomedical Science Tower 3, Room 2047, 3501 5th Ave, Pittsburgh, PA, USA.
Anthony D'AbramoDepartment of Laboratory Medicine, Yale University School of Medicine, 333, Cedar St., New Haven, CT 06520-8035, USA.
Susan F CotmoreDepartment of Laboratory Medicine, Yale University School of Medicine, 333, Cedar St., New Haven, CT 06520-8035, USA.
Peter TattersallDepartment of Laboratory Medicine, Yale University School of Medicine, 333, Cedar St., New Haven, CT 06520-8035, USA; Department of Genetics, Yale University School of Medicine, 333, Cedar St., New Haven, CT 06520-8035, USA.
Susan HafensteinDepartment of Medicine, Pennsylvania State University College of Medicine, 500 University Drive, Hershey, PA 17033, USA. Electronic address: shafenstein@hmc.psu.edu.
Pennsylvania State University · USYale University · USUniversity of Pittsburgh · USEuskadiko Parke Teknologikoa · ESLake Erie College of Osteopathic Medicine · US

Funding

MOLECULAR BASIS OF PARVOVIRUS TARGET CELL SPECIFICITYR01CA029303 · NCI · YALE UNIVERSITY · PI TATTERSALL, PETER J. · 1985 to 2016
$7.5M
VIRUSES AND CANCERT32CA060395 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI MEYERS, CRAIG M · 1994 to 2021
$4.3M
Mechanisms of Enterovirus EntryR01AI107121 · NIAID · UNIVERSITY OF MINNESOTA · PI HAFENSTEIN, SUSAN · 2015 to 2024
$3.9M
Acquisition of a Cryo-Electron MicroscopeS10OD011986 · OD · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI HAFENSTEIN, SUSAN · 2012 to 2012
$600k
Direct electron detecting (DED) cameraS10OD019995 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CONWAY, JAMES F. · 2015 to 2015
$548k
NCI NIH HHS R01 CA029303NCI NIH HHS T32 CA060395NIAID NIH HHS R01 AI107121NIH HHS S10 OD011986NIH HHS S10 OD019995
6 · The paper itself

Abstract

In minute virus of mice (MVM) capsids, icosahedral five-fold channels serve as portals mediating genome packaging, genome release, and the phased extrusion of viral peptides. Previous studies suggest that residues L172 and V40 are essential for channel function. The structures of MVMi wildtype, and mutant L172T and V40A virus-like particles (VLPs) were solved from cryo-EM data. Two constriction points, termed the mid-gate and inner-gate, were observed in the channels of wildtype particles, involving residues L172 and V40 respectively. While the mid-gate of V40A VLPs appeared normal, in L172T adjacent channel walls were altered, and in both mutants there was major disruption of the inner-gate, demonstrating that direct L172:V40 bonding is essential for its structural integrity. In wildtype particles, residues from the N-termini of VP2 map into claw-like densities positioned below the channel opening, which become disordered in the mutants, implicating both L172 and V40 in the organization of VP2 N-termini.

Indexed as

Cryoelectron MicroscopyCapsidMinute Virus of MiceMutationVirosomesVirosomesEntry/exit portal dynamicsFive-fold channelGatekeeper mutationLow resolution cryo-EM densityMinute virus of miceMutant capsidMVM, cryo-EM image reconstructionPackaging single-stranded DNAParvovirus

Identifiers

PMID28750325
PMCPMC5601314
OpenAlexW2739078031

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.