Evidence map›Paper›PMID 28749451›Full record

ArticleViruses2017

Characterization of Two Historic Smallpox Specimens from a Czech Museum.

Petr Pajer, Jiri Dresler, Hana Kabíckova, Libor Písa, Pavel Aganov, Karel Fucik, Daniel Elleder, Tomas Hron, Vitezslav Kuzelka, Petr Velemínsky and 13 more

Open access · goldAbstract readHistorical Article
In one paragraph

Article in Viruses, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Variola virus genome sequenced from an eighteenth-century museum specimen supports the recent origin of smallpox.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Loeffler 4.0: Diagnostic Metagenomics.Advances in virus research · 2017
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors at 10 institutions in 2 countries.

Petr PajerMilitary Health Institute, Military Medical Agency, Tychonova 1, 160 01 Prague 6, Czech Republic. pajer@img.cas.cz.
Jiri DreslerMilitary Health Institute, Military Medical Agency, Tychonova 1, 160 01 Prague 6, Czech Republic. jiri.dresler@gmail.com.
Hana KabíckovaMilitary Health Institute, Military Medical Agency, Tychonova 1, 160 01 Prague 6, Czech Republic. hkabickova@centrum.cz.
Libor PísaMilitary Health Institute, Military Medical Agency, Tychonova 1, 160 01 Prague 6, Czech Republic. l.pisa@email.cz.
Pavel AganovMilitary Health Institute, Military Medical Agency, Tychonova 1, 160 01 Prague 6, Czech Republic. agap@volny.cz.
Karel FucikMilitary Health Institute, Military Medical Agency, Tychonova 1, 160 01 Prague 6, Czech Republic. fucik.karel@tiscali.cz.
Daniel EllederInstitute of Molecular Genetics of the ASCR, v. v. i., Vídeňská 1083, 142 20 Prague 4, Czech Republic. daniel.elleder@img.cas.cz.
Tomas HronInstitute of Molecular Genetics of the ASCR, v. v. i., Vídeňská 1083, 142 20 Prague 4, Czech Republic. tomas.hron89@gmail.com.
Vitezslav KuzelkaNational Museum, Department of Anthropology, Václavské náměstí 68, 115 79 Praha 1, Czech Republic. vitezslav_kuzelka@nm.cz.
Petr VelemínskyNational Museum, Department of Anthropology, Václavské náměstí 68, 115 79 Praha 1, Czech Republic. petr_veleminsky@nm.cz.
Jana KlimentovaFaculty of Military Health Sciences, University of Defence, Třebešská 1575, 500 01 Hradec Králové, Czech Republic. jana.klimentova@unob.cz.
Alena FucikovaFaculty of Military Health Sciences, University of Defence, Třebešská 1575, 500 01 Hradec Králové, Czech Republic. alena.myslivcovafucikova@unob.cz.
Jaroslav PejchalFaculty of Military Health Sciences, University of Defence, Třebešská 1575, 500 01 Hradec Králové, Czech Republic. jaroslav.pejchal@unob.cz.
Rita HrabakovaLaboratory of Applied Proteome Analyses, Institute of Animal Physiology and Genetics, Academy of Sciences of the Czech Republic, Rumburská 89, 277 21 Liběchov, Czech Republic. rita.hrabakova@gmail.com.
Vladimir BenesGenomics Core Facility, EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany. benes@embl.de.
Tobias RauschGenomics Core Facility, EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany. rausch@embl.de.
Pavel DundrInstitute of Pathology of the First Faculty of Medicine and General Teaching Hospital, Studničkova 2, 128 00 Prague, Czech Republic. pdundr@seznam.cz.
Alexander PilinInstitute of Forensic Medicine and Toxicology, First Faculty of Medicine, Charles University and General University Hospital in Prague, Studničkova 4, 128 21, Praha 2, Czech Republic. Alexander.Pilin@vfn.cz.
Radomir CabalaInstitute of Forensic Medicine and Toxicology, First Faculty of Medicine, Charles University and General University Hospital in Prague, Studničkova 4, 128 21, Praha 2, Czech Republic. radomir.cabala@vfn.cz.
Martin HubalekInstitute of Organic Chemistry and Biochemistry of the CAS, Flemingovo náměstí 542/2, 166 10 Praha 6, Czech Republic. martin.hubalek@uochb.cas.cz.
Jan StríbrnyMilitary Institute of Forensic Medicine, Military University Hospital Prague, U Vojenské nemocnice 1200, 169 02 Praha 6. jan.stribrny@uvn.cz.
Markus H AntwerpenBundeswehr Institute of Microbiology, Neuherbergstr. 11, 80937 Munich, Germany. hermann1meyer@bundeswehr.org.
Hermann MeyerBundeswehr Institute of Microbiology, Neuherbergstr. 11, 80937 Munich, Germany. hermann1meyer@bundeswehr.org.
University of Defence · CZCharles University · CZCzech Academy of Sciences, Institute of Molecular Genetics · CZEuropean Molecular Biology Organization · DENational Museum · CZUniversität der Bundeswehr München · DECzech Academy of Sciences, Institute of Animal Physiology and Genetics · CZCzech Academy of Sciences, Institute of Organic Chemistry and Biochemistry · CZGeneral University Hospital in Prague · CZMilitary University Hospital Prague · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although smallpox has been known for centuries, the oldest available variola virus strains were isolated in the early 1940s. At that time, large regions of the world were already smallpox-free. Therefore, genetic information of these strains can represent only the very last fraction of a long evolutionary process. Based on the genomes of 48 strains, two clades are differentiated: Clade 1 includes variants of variola major, and clade 2 includes West African and variola minor (Alastrim) strains. Recently, the genome of an almost 400-year-old Lithuanian mummy was determined, which fell basal to all currently sequenced strains of variola virus on phylogenetic trees. Here, we determined two complete variola virus genomes from human tissues kept in a museum in Prague dating back 60 and 160 years, respectively. Moreover, mass spectrometry-based proteomic, chemical, and microscopic examinations were performed. The 60-year-old specimen was most likely an importation from India, a country with endemic smallpox at that time. The genome of the 160-year-old specimen is related to clade 2 West African and variola minor strains. This sequence likely represents a new endemic European variant of variola virus circulating in the midst of the 19th century in Europe.

Indexed as

Genome, ViralMuseumsCzech RepublicDNA, ViralEuropeEvolution, MolecularHigh-Throughput Nucleotide SequencingHistory, 19th CenturyHistory, 20th CenturyHumansIndiaPhylogenyPolymerase Chain ReactionProteomicsSmallpoxVariola virusDNA, Viralevolutionhistoric specimennext generation sequencingphylogenysmallpoxvariola virus

Identifiers

PMID28749451
PMCPMC5580457
OpenAlexW2740465368

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.