Evidence map›Paper›PMID 28748955›Full record

ArticleNature communications2017

Bayesian association scan reveals loci associated with human lifespan and linked biomarkers.

Aaron F McDaid, Peter K Joshi, Eleonora Porcu, Andrea Komljenovic, Hao Li, Vincenzo Sorrentino, Maria Litovchenko, Roel P J Bevers, Sina Rüeger, Alexandre Reymond and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 2 pooled it
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 2 syntheses or guidelines pooled it, 86 citations in OpenAlex.

  1. Pooled it
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  14. NMR metabolomic modelling of age and lifespan: a multi-cohort analysis.medRxiv : the preprint server for health sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 4 countries.

Aaron F McDaidInstitute of Social and Preventive Medicine (IUMSP), Lausanne University Hospital, Lausanne 1010, Switzerland.ORCID 0000-0002-5209-8869
Peter K JoshiCentre for Global Health Research, Usher Institute for Population Health Sciences and Informatics, University of Edinburgh, Teviot Place, Edinburgh EH8 9AG, Scotland.ORCID 0000-0002-6361-5059
Eleonora PorcuSwiss Institute of Bioinformatics, Lausanne 1015, Switzerland.
Andrea KomljenovicSwiss Institute of Bioinformatics, Lausanne 1015, Switzerland.ORCID 0000-0002-8739-748X
Hao LiLaboratory of Integrative and Systems Physiology, Institute of Bioengineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland.
Vincenzo SorrentinoLaboratory of Integrative and Systems Physiology, Institute of Bioengineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland.
Maria LitovchenkoSwiss Institute of Bioinformatics, Lausanne 1015, Switzerland.
Roel P J BeversSwiss Institute of Bioinformatics, Lausanne 1015, Switzerland.
Sina RüegerInstitute of Social and Preventive Medicine (IUMSP), Lausanne University Hospital, Lausanne 1010, Switzerland.
Alexandre ReymondCenter for Integrative Genomics, University of Lausanne, Lausanne 1015, Switzerland.
Murielle BochudInstitute of Social and Preventive Medicine (IUMSP), Lausanne University Hospital, Lausanne 1010, Switzerland.
Bart DeplanckeSwiss Institute of Bioinformatics, Lausanne 1015, Switzerland.ORCID 0000-0001-9935-843X
Robert W WilliamsDepartment of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA.
Marc Robinson-RechaviSwiss Institute of Bioinformatics, Lausanne 1015, Switzerland.
Fred PaccaudInstitute of Social and Preventive Medicine (IUMSP), Lausanne University Hospital, Lausanne 1010, Switzerland.
Valentin RoussonInstitute of Social and Preventive Medicine (IUMSP), Lausanne University Hospital, Lausanne 1010, Switzerland.
Johan AuwerxLaboratory of Integrative and Systems Physiology, Institute of Bioengineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland.
James F WilsonCentre for Global Health Research, Usher Institute for Population Health Sciences and Informatics, University of Edinburgh, Teviot Place, Edinburgh EH8 9AG, Scotland.ORCID 0000-0001-5751-9178
Zoltán KutalikInstitute of Social and Preventive Medicine (IUMSP), Lausanne University Hospital, Lausanne 1010, Switzerland.
SIB Swiss Institute of Bioinformatics · CHÉcole Polytechnique Fédérale de Lausanne · CHInstitute of Social and Preventive Medicine · CHCentre for Global Health Research · CAUniversity of Lausanne · CHUniversity of Tennessee Health Science Center · USWestern General Hospital · GB

Funding

Translational Systems Genetics of Mitochondria, Metabolism, and AgingR01AG043930 · NIA · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI WILLIAMS, ROBERT W. · 2013 to 2017
$2.5M
Medical Research Council MC_QA137853NIA NIH HHS R01 AG043930
6 · The paper itself

Abstract

The enormous variation in human lifespan is in part due to a myriad of sequence variants, only a few of which have been revealed to date. Since many life-shortening events are related to diseases, we developed a Mendelian randomization-based method combining 58 disease-related GWA studies to derive longevity priors for all HapMap SNPs. A Bayesian association scan, informed by these priors, for parental age of death in the UK Biobank study (n=116,279) revealed 16 independent SNPs with significant Bayes factor at a 5% false discovery rate (FDR). Eleven of them replicate (5% FDR) in five independent longevity studies combined; all but three are depleted of the life-shortening alleles in older Biobank participants. Further analysis revealed that brain expression levels of nearby genes (RBM6, SULT1A1 and CHRNA5) might be causally implicated in longevity. Gene expression and caloric restriction experiments in model organisms confirm the conserved role for RBM6 and SULT1A1 in modulating lifespan.

Indexed as

Polymorphism, Single NucleotideAgedAged, 80 and overArylsulfotransferaseBayes TheoremBiomarkersDiseaseFemaleGenome-Wide Association StudyHumansLongevityMaleNerve Tissue ProteinsReceptors, NicotinicRNA-Binding ProteinsUnited KingdomArylsulfotransferaseBiomarkersCHRNA5 protein, humanNerve Tissue ProteinsRBM6 protein, humanReceptors, NicotinicRNA-Binding ProteinsSULT1A1 protein, human

Identifiers

PMID28748955
PMCPMC5537485
OpenAlexW2740078953

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.