Evidence map›Paper›PMID 28747506›Full record

ArticleJournal of virology2017

Hepatitis C Virus Induces the Localization of Lipid Rafts to Autophagosomes for Its RNA Replication.

Ja Yeon Kim, Linya Wang, Jiyoung Lee, Jing-Hsiung James Ou

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Hepatitis B virus entry, assembly, and egress.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  6. Article
  7. Article
  8. Review
  9. HCV-induced autophagy and innate immunity.Frontiers in immunology · 2024
    Review
  10. Article
  11. Review
  12. The autophagy machinery interacts with EBV capsids during viral envelope release.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Article
  14. Article
  15. Review
  16. Beyond Autophagy: The Expanding Roles of ATG8 Proteins.Trends in biochemical sciences · 2021
    Review
  17. Article
  18. Article
  19. Article
  20. Autophagy in liver diseases.World journal of hepatology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ja Yeon KimDepartment of Molecular Microbiology and Immunology, University of Southern California Keck School of Medicine, Los Angeles, California, USA.
Linya WangDepartment of Molecular Microbiology and Immunology, University of Southern California Keck School of Medicine, Los Angeles, California, USA.
Jiyoung LeeDepartment of Molecular Microbiology and Immunology, University of Southern California Keck School of Medicine, Los Angeles, California, USA.
Jing-Hsiung James OuDepartment of Molecular Microbiology and Immunology, University of Southern California Keck School of Medicine, Los Angeles, California, USA jamesou@hsc.usc.edu.
University of Southern California · US

Funding

Hepatitis C virus and autophagic responseR01DK094652 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI OU, J.-H. JAMES · 2011 to 2020
$3.2M
HBV replication and carcinogenesisR01CA177337 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI OU, J.-H. JAMES · 2013 to 2015
$583k
NCI NIH HHS R01 CA177337NIDDK NIH HHS R01 DK094652
6 · The paper itself

Abstract

Autophagy plays important roles in maintaining cellular homeostasis. It uses double- or multiple-membrane vesicles termed autophagosomes to remove protein aggregates and damaged organelles from the cytoplasm for recycling. Hepatitis C virus (HCV) has been shown to induce autophagy to enhance its own replication. Here we describe a procedure that combines membrane flotation and affinity chromatography for the purification of autophagosomes from cells that harbor an HCV subgenomic RNA replicon. The purified autophagosomes had double- or multiple-membrane structures with a diameter ranging from 200 nm to 600 nm. The analysis of proteins associated with HCV-induced autophagosomes by proteomics led to the identification of HCV nonstructural proteins as well as proteins involved in membrane trafficking. Notably, caveolin-1, caveolin-2, and annexin A2, which are proteins associated with lipid rafts, were also identified. The association of lipid rafts with HCV-induced autophagosomes was confirmed by Western blotting, immunofluorescence microscopy, and immunoelectron microscopy. Their association with autophagosomes was also confirmed in HCV-infected cells. The association of lipid rafts with autophagosomes was specific to HCV, as it was not detected in autophagosomes induced by nutrient starvation. Further analysis indicated that the autophagosomes purified from HCV replicon cells could mediate HCV RNA replication in a lipid raft-dependent manner, as the depletion of cholesterol, a major component of lipid rafts, from autophagosomes abolished HCV RNA replication. Our studies thus demonstrated that HCV could specifically induce the association of lipid rafts with autophagosomes for its RNA replication.

Indexed as

Virus ReplicationAnnexin A2AutophagosomesAutophagyBlotting, WesternCaveolin 1Caveolin 2Cell LineCholesterolChromatography, AffinityHepacivirusHost-Pathogen InteractionsHumansMembrane MicrodomainsMicroscopy, FluorescenceMicroscopy, ImmunoelectronAnnexin A2Caveolin 1Caveolin 2CholesterolRNA, ViralViral Nonstructural ProteinsautophagosomesautophagyHCV RNA replicationhepatitis C viruslipid raftsproteomics

Identifiers

PMID28747506
PMCPMC5625520
OpenAlexW2737225108

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.