Evidence map›Paper›PMID 28747435›Full record

ArticleThe Journal of biological chemistry2017

Search for DNA damage by human alkyladenine DNA glycosylase involves early intercalation by an aromatic residue.

Jenna M Hendershot, Patrick J O'Brien

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Jenna M HendershotFrom the Department of Biological Chemistry, University of Michigan Medical School, Ann Arbor, Michigan 48109-0600.
Patrick J O'BrienFrom the Department of Biological Chemistry, University of Michigan Medical School, Ann Arbor, Michigan 48109-0600 pjobrien@umich.edu.ORCID 0000-0001-7853-8626

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THEODORE S LAWRENCE · 1988 to 2026
$178.2M
UNMC/EPPLEY CANCER CENTER SUPPORT GRANTP30CA036727 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Apar Kishor Ganti · 1985 to 2026
$55.0M
Cellular Biotechnology Training Program (CBTP)T32GM008353 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SCHWENDEMAN, ANNA · 1991 to 2021
$9.3M
MICHIGAN CHEMISTRY-BIOLOGY INTERFACE TRAINING PROGRAMT32GM008597 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MONTGOMERY, JOHN · 1996 to 2018
$5.0M
Cellular Biotechnology Training Program (CBTP) - Years 31-35T32GM145304 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Guizhi Zhu · 2022 to 2026
$2.6M
DNA-Protein Dynamics in Base Excision DNA RepairR01GM108022 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI O'BRIEN, PATRICK J · 2013 to 2016
$1.1M
NCI NIH HHS P30 CA036727NCI NIH HHS P30 CA046592NIGMS NIH HHS R01 GM108022NIGMS NIH HHS T32 GM008353NIGMS NIH HHS T32 GM008597NIGMS NIH HHS T32 GM145304
6 · The paper itself

Abstract

DNA repair enzymes recognize and remove damaged bases that are embedded in the duplex. To gain access, most enzymes use nucleotide flipping, whereby the target nucleotide is rotated 180° into the active site. In human alkyladenine DNA glycosylase (AAG), the enzyme that initiates base excision repair of alkylated bases, the flipped-out nucleotide is stabilized by intercalation of the side chain of tyrosine 162 that replaces the lesion nucleobase. Previous kinetic studies provided evidence for the formation of a transient complex that precedes the stable flipped-out complex, but it is not clear how this complex differs from nonspecific complexes. We used site-directed mutagenesis and transient-kinetic approaches to investigate the timing of Tyr

Indexed as

DNA DamageDNA RepairModels, MolecularAmino Acid SubstitutionBinding SitesBiocatalysisCatalytic DomainDNADNA GlycosylasesHumansKineticsMutagenesis, Site-DirectedMutationNucleic Acid ConformationNucleotide MotifsPeptide Fragments3-methyladenine-DNA glycosylaseDNADNA GlycosylasesPeptide FragmentsRecombinant ProteinsTyrosinebase excision repairbase flippingDNA glycosylaseDNA repairenzyme mechanismfluorescencenucleotide flippingpre-steady-state kinetics

Identifiers

PMID28747435
PMCPMC5625039

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.