ArticleBMC plant biology2017
Comparative RNA-seq based transcriptome profiling of waterlogging response in cucumber hypocotyls reveals novel insights into the de novo adventitious root primordia initiation.
Article in BMC plant biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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32 citing papers in PubMed, 79 citations in OpenAlex.
- Article
- Article
- The down-regulation of MsWOX13-2 promotes enhanced waterlogging resilience in alfalfa.The Plant journal : for cell and molecular biology · 2025Article
- A review of soil waterlogging impacts, mechanisms, and adaptive strategies.Frontiers in plant science · 2025Review
- RNA-seq-based comparative transcriptome analysis reveals the role ofHorticulture research · 2024Article
- Post-Emergence Water-Dispersal Application Provides Equal Herbicidal Activity againstPlants (Basel, Switzerland) · 2023Article
- Transcriptome Analysis Reveals Genes Associated with Flooding Tolerance in Mulberry Plants.Life (Basel, Switzerland) · 2023Article
- Oxygenation alleviates waterlogging-caused damages to cherry rootstocks.Molecular horticulture · 2023Article
- Transcriptome analysis of barley (Hordeum vulgare L.) under waterlogging stress, and overexpression of the HvADH4 gene confers waterlogging tolerance in transgenic Arabidopsis.BMC plant biology · 2023Article
- The Role of Phytohormones in Plant Response to Flooding.International journal of molecular sciences · 2022Review
- Unveiling Molecular Mechanisms of Nitric Oxide-Induced Low-Temperature Tolerance in Cucumber by Transcriptome Profiling.International journal of molecular sciences · 2022Article
- RNA-Seq Reveals Waterlogging-Triggered Root Plasticity in Mungbean Associated with Ethylene and Jasmonic Acid Signal Integrators for Root Regeneration.Plants (Basel, Switzerland) · 2022Article
- Transcriptomic profiling suggests candidate molecular responses to waterlogging in cassava.PloS one · 2022Article
- Article
- Genome-wide association scan and transcriptome analysis reveal candidate genes for waterlogging tolerance in cultivated barley.Frontiers in plant science · 2022Article
- Comparative transcriptomic analysis of the gene expression and underlying molecular mechanism of submergence stress response in orchardgrass roots.Frontiers in plant science · 2022Article
- Waterlogging-Stress-Responsive LncRNAs, Their Regulatory Relationships with miRNAs and Target Genes in Cucumber (International journal of molecular sciences · 2021Article
- Depicting the molecular responses of adventitious rooting to waterlogging in melon hypocotyls by transcriptome profiling.3 Biotech · 2021Article
- Article
- Quantitative Proteomics and Relative Enzymatic Activities Reveal Different Mechanisms in Two Peanut Cultivars (Frontiers in plant science · 2021Article
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6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundWaterlogging is a serious abiotic stress to plant growth because it results in the decline in the supplement of oxygen to submerged tissues. Although cucumber (Cucumis sativus L.) is sensitive to waterlogging, its ability to generate adventitious roots (ARs) facilitates gas diffusion and increases plant survival when the oxygen concentration is decreased. To gain a better understanding of the molecular mechanisms that enable de novo AR primordia emergence upon waterlogging, the RNA sequencing-based transcriptomic responses of two contrasting cucumber genotypes, Zaoer-N (waterlogging tolerant) and Pepino (waterlogging sensitive), which differed in their abilities to form AR were compared.
resultsMore than 27,000 transcripts were detected in cucumber hypocotyls, from which 1494 and 1766 genes in 'Zaoer-N' and 'Pepino', respectively, were differentially expressed 2 days after waterlogging. The significant positive correlation between RNA sequencing data and a qPCR analysis indicated that the identified genes were credible. A comparative analysis revealed that genes functioning in carbohydrate mobilization, nitrate assimilation, hormone production and signaling pathways, transcription factors and cell division might contribute to the waterlogging-triggered AR primordia initiation. Ethylene was determined to be an important plant hormone responsible for the cucumber ARs initiation. Additionally, genes encoding cytochrome P450, ankyrin repeat-containing proteins and sulfite oxidases were determined as important in waterlogging acclimation.
conclusionThis research broadens our understanding of the mechanism underlying waterlogging-triggered ARs emergence, and provides valuable information for the breeding of cucumber with enhanced waterlogging tolerance.
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