Evidence map›Paper›PMID 28746881›Full record

ArticleCell reports2017

Mass Cytometric Analysis of HIV Entry, Replication, and Remodeling in Tissue CD4+ T Cells.

Marielle Cavrois, Trambak Banerjee, Gourab Mukherjee, Nandhini Raman, Rajaa Hussien, Brandon Aguilar Rodriguez, Joshua Vasquez, Matthew H Spitzer, Nicole H Lazarus, Jennifer J Jones and 7 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 81 citations in OpenAlex.

  1. Article
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  13. Advances in HIV Research Using Mass Cytometry.Current HIV/AIDS reports · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 1 country.

Marielle CavroisGladstone Institute of Virology and Immunology, San Francisco, CA 94158, USA; Department of Medicine, University of California, San Francisco, San Francisco, CA 94158, USA.
Trambak BanerjeeDepartment of Data Sciences and Operations, University of Southern California, Los Angeles, CA 90089, USA.
Gourab MukherjeeDepartment of Data Sciences and Operations, University of Southern California, Los Angeles, CA 90089, USA.
Nandhini RamanGladstone Institute of Virology and Immunology, San Francisco, CA 94158, USA.
Rajaa HussienDivision of Experimental Medicine, Department of Medicine, University of California, San Francisco, San Francisco, CA 94110, USA.
Brandon Aguilar RodriguezDivision of Experimental Medicine, Department of Medicine, University of California, San Francisco, San Francisco, CA 94110, USA.
Joshua VasquezDivision of Experimental Medicine, Department of Medicine, University of California, San Francisco, San Francisco, CA 94110, USA.
Matthew H SpitzerDepartment of Microbiology and Immunology and the Helen Diller Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA 94115, USA.
Nicole H LazarusDepartment of Pathology, Stanford School of Medicine, Stanford, CA 94305-5324, USA; Palo Alto Veterans Institute for Research and the Palo Alto Veterans Affairs Health Care Center, Palo Alto, CA 94304-1290, USA.
Jennifer J JonesDepartment of Medicine, University of Alabama, Birmingham, AL 35233-1912, USA.
Christina OchsenbauerDepartment of Medicine, University of Alabama, Birmingham, AL 35233-1912, USA; Center for AIDS Research, University of Alabama, Birmingham, AL 35294-2107, USA.
Joseph M McCuneDivision of Experimental Medicine, Department of Medicine, University of California, San Francisco, San Francisco, CA 94110, USA.
Eugene C ButcherDepartment of Pathology, Stanford School of Medicine, Stanford, CA 94305-5324, USA; Palo Alto Veterans Institute for Research and the Palo Alto Veterans Affairs Health Care Center, Palo Alto, CA 94304-1290, USA.
Ann M ArvinDepartments of Pediatrics and Microbiology and Immunology, Stanford School of Medicine, Stanford, CA 94305-5324, USA.
Nandini SenDepartments of Pediatrics and Microbiology and Immunology, Stanford School of Medicine, Stanford, CA 94305-5324, USA.
Warner C GreeneGladstone Institute of Virology and Immunology, San Francisco, CA 94158, USA; Department of Medicine, University of California, San Francisco, San Francisco, CA 94158, USA; Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94158, USA.
Nadia R RoanGladstone Institute of Virology and Immunology, San Francisco, CA 94158, USA; Department of Urology, University of California, San Francisco, San Francisco, CA 94143, USA. Electronic address: nadia.roan@ucsf.edu.
University of California, San Francisco · USStanford Medicine · USGladstone Institutes · USUniversity of Alabama at Birmingham · USUniversity of Southern California · USPalo Alto Veterans Institute for Research · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI OLAF KUTSCH · 1988 to 2026
$84.1M
Viral reservoirs and sanctuaries in HAART - treated patients: role and mechanismsU19AI096109 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SCHACKER, TIMOTHY W · 2011 to 2015
$29.5M
HIV without AIDS: A Radically Different Approach to Help the Developing WorldDP1DA036502 · NIDA · J. DAVID GLADSTONE INSTITUTES · PI GREENE, WARNER C. · 2013 to 2017
$4.9M
Elucidating the mechanism of progesterone-induced permissivity in the upperfemale reproductive tractR01AI127219 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ROAN, NADIA R · 2016 to 2020
$2.1M
CyTOFS10OD016318 · OD · STANFORD UNIVERSITY · PI NOLAN, GARRY P · 2013 to 2013
$600k
BD FACSAria II Flow CytometerS10RR028962 · NCRR · J. DAVID GLADSTONE INSTITUTES · PI CAVROIS, MARIELLE · 2011 to 2011
$544k
Exploring the Role of Semen Amyloids in Promoting HIV Infection and FertilizationR00AI104262 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ROAN, NADIA R · 2015 to 2016
$493k
NCRR NIH HHS S10 RR028962NIAID NIH HHS P30 AI027763NIAID NIH HHS P30 AI027767NIAID NIH HHS R00 AI104262NIAID NIH HHS R01 AI127219NIAID NIH HHS U19 AI096109NIDA NIH HHS DP1 DA036502NIH HHS S10 OD016318
6 · The paper itself

Abstract

To characterize susceptibility to HIV infection, we phenotyped infected tonsillar T cells by single-cell mass cytometry and created comprehensive maps to identify which subsets of CD4+ T cells support HIV fusion and productive infection. By comparing HIV-fused and HIV-infected cells through dimensionality reduction, clustering, and statistical approaches to account for viral perturbations, we identified a subset of memory CD4+ T cells that support HIV entry but not viral gene expression. These cells express high levels of CD127, the IL-7 receptor, and are believed to be long-lived lymphocytes. In HIV-infected patients, CD127-expressing cells preferentially localize to extrafollicular lymphoid regions with limited viral replication. Thus, CyTOF-based phenotyping, combined with analytical approaches to distinguish between selective infection and receptor modulation by viruses, can be used as a discovery tool.

Indexed as

CD4-Positive T-LymphocytesCells, CulturedFlow CytometryFluorescent Antibody TechniqueHIV InfectionsHumansInterleukin-7 Receptor alpha SubunitVirus ReplicationInterleukin-7 Receptor alpha SubunitCD127CD4+ T cellCyTOFHIVremodelingviral fusion

Identifiers

PMID28746881
PMCPMC5560086
OpenAlexW2736796793

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.